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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGC]
[+] EMBL BM579896 [CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGC]
consensusID : consensus_5498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGGACTGGCAGGATCGTGCCAGAGTGCTAGAGTGAGTTTTCGGTAGTTGAGCAAGGCAGGGTAGGAGCGAACACAAGCAGGAGCGAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTG]
[+] EMBL BM608498 [CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGGACTGGCAGGATCGTGCCAGAGTGCTAGAGTGAGTTTTCGGTAGTTGAGCAAGGCAGGGTAGGAGCGAACACAAGCAGGAGCGAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTG]
consensusID : consensus_5498#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGT]
[+] EMBL BM577991 [CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGT]
consensusID : consensus_5498#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAACCGGTTTTAACATTTACGTTATTGGGGCAATCGTGTGCGTCGTTTGCATCTTCTACACACTTCTGGGCGGTATTAAGGCGGTTGTGTTCACCGACGCTTGGCAGGTGGTGGTAATGTTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTCCGGGCGTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCTATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCGTACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACTGCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC]
[+] EMBL BM616488 [CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAACCGGTTTTAACATTTACGTTATTGGGGCAATCGTGTGCGTCGTTTGCATCTTCTACACACTTCTGGGCGGTATTAAGGCGGTTGTGTTCACCGACGCTTGGCAGGTGGTGGTAATGTTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTCCGGGCGTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCTATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCGTACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACTGCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5498#0 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATG 45
consensus_5498#2 CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATG 60
consensus_5498#1 ------CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGG---ACTG 51
consensus_5498#3 ------------------------------------------------------------
consensus_5498#0 TTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATT--GTTGACAAAATCTGCT 103
consensus_5498#2 TTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATT--GTTGACAAAATCTGCT 118
consensus_5498#1 GCAGGATCGTGCCAGAGTGCTAGAG----TGAGTTTTCGGTA--GTTGAGCAAGGCAG-- 103
consensus_5498#3 CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCC 60
* * * * ***** *
consensus_5498#0 CTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCA 163
consensus_5498#2 CTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCA 178
consensus_5498#1 ----GGTAGGAGCGAACACAAGC-----AGGAGCGAAGATGTCGTCTCCCAGAAGCACCA 154
consensus_5498#3 GTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGT-TAAACTCTTCGTACGAATA 119
* * ** * ** * * *** * * * *
consensus_5498#0 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 221
consensus_5498#2 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 236
consensus_5498#1 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 212
consensus_5498#3 TTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAA 179
* * * * * *** * * * ** * **** * ** * * *
consensus_5498#0 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 277
consensus_5498#2 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 292
consensus_5498#1 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 268
consensus_5498#3 TCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAAC 239
* ***** ** ** ** * * * * * * ** *****
consensus_5498#0 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 335
consensus_5498#2 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 350
consensus_5498#1 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 326
consensus_5498#3 CGGTTTTAACATTTACGTTATTGG-GGCAATCGTGTGCGTCGTTTGCATCTTCTAC-ACA 297
** **** * * * * ** * * * * * * * * *** * * *
consensus_5498#0 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 395
consensus_5498#2 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 410
consensus_5498#1 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 386
consensus_5498#3 CTTCTGGGCGGTATTAAGGCGGT-TGTGTTCACCGACGCTT--GGCAGGTGGTGGTAATG 354
* * * ** * * * *** ** ** * ** * * *
consensus_5498#0 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 453
consensus_5498#2 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 468
consensus_5498#1 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 444
consensus_5498#3 TTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTC---CGGGC 411
** **** ** * *** * ** * ** * ** * ****
consensus_5498#0 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 512
consensus_5498#2 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 527
consensus_5498#1 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 503
consensus_5498#3 GTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCT 471
** * * * * ** * ** * * ** *** ******* **
consensus_5498#0 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 570
consensus_5498#2 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 585
consensus_5498#1 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 561
consensus_5498#3 ATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCG 531
*** ** * ** ** * * ***** ** * * * *** * *
consensus_5498#0 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 629
consensus_5498#2 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 644
consensus_5498#1 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 620
consensus_5498#3 TACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACT 591
* * * * * * ** * * ** * * * * * * *
consensus_5498#0 CAATCCTTACGTACGATCGATGGCGTCA-GTAATGTTTGTCATTAATCAGATGC------ 682
consensus_5498#2 CAATCCTTACGTACGATCGATGGCGT---------------------------------- 670
consensus_5498#1 CAATCCTTACGTACGATCGATGGCGTCA-GTAATGTTTGTCATTAATCAGATGCTATTCT 679
consensus_5498#3 GCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC 651
* ** * * ** *
consensus_5498#0 --
consensus_5498#2 --
consensus_5498#1 TG 681
consensus_5498#3 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||