cluster # 5499

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Anopheles gambiae
cluster # 5499 cluster # 5499 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5499#0 length = 633 sequences # 2

consensus_5499#1 length = 600 sequences # 1
consensus_5499#2 length = 595 sequences # 1

consensusID : consensus_5499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG]

[+] EMBL BM578023             [CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAA                          ]
[+] EMBL BM615769             [                             ccgAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG]




>consensus_5499#0
CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAATAATGCCTCAAACACCGA
TAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCAC
AGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAATGGAGGCAATGCGCTGCG
CCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCCCAAAAGCTACTACGAGC
TGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTC
AGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGC
CACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGA
AGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGTACAGCATCCCTTGCGGG
GGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGC
ACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGATGCGATCGACTTTGTGC
TGACCAACTTTGCCGAGATGAACAAGCTGTGGG

consensusID : consensus_5499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [TCCGAAGAACCTAATTACAGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA]

[+] EMBL BM601087             [TCCGAAGAACCTAATTACAGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA]




>consensus_5499#1
TCCGAAGAACCTAATTACAGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATA
ATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATG
ACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATG
GAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCC
AAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTAC
CTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTAC
GCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAG
ACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTA
CAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACAT
CCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA

consensusID : consensus_5499#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CCGCCCACGCGTCCGGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA]

[+] EMBL BM655393             [CCGCCCACGCGTCCGGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGCATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA]




>consensus_5499#2
CCGCCCACGCGTCCGGAAGAAGCAGCAGAGATAAAAGAGTGGATAGATAATAAATAATGC
CTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGATGACGG
TGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAATGGAGG
CAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCCCAAAA
GCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTACCTGC
TGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTACGCGG
GCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAAGACGA
ACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGTACAGC
ATCCCTTGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACATCCTGC
CGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5499#1      TCCGAAGAACCTAATTACAGAAGAAGCAGCAG-AGATAAAAGAGTGGATAGATAATAAAT 59
consensus_5499#2      ----CCGCCCACGCGTCCGGAAGAAGCAGCAG-AGATAAAAGAGTGGATAGATAATAAAT 55
consensus_5499#0      -----------------CCGCGGACGCGTGGGCGGACGCGTGGGTGGATAGATAATAAAT 43
                                       * *  ** **    *  **     * *****************

consensus_5499#1      AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 119
consensus_5499#2      AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 115
consensus_5499#0      AATGCCTCAAACACCGATAAACTCTGTCGATGAGCAGGACAAGCTGCTCACCGAAGCGAT 103
                      ************************************************************

consensus_5499#1      GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAAT 179
consensus_5499#2      GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGGACAAGGACCGGCTAAT 175
consensus_5499#0      GACGGTGGTGCGAGCACAGTCCTTCCAGATGAAGCGCTTCCTGTACAAGGACCGGCTAAT 163
                      ******************************************* ****************

consensus_5499#1      GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCC 239
consensus_5499#2      GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTGCGCACATCGCTGCTGTCGCC 235
consensus_5499#0      GGAGGCAATGCGCTGCGCCTCGACCATGCTCGGGGAGCTCCGTACATCGCTGCTGTCGCC 223
                      *************************************** ** *****************

consensus_5499#1      CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 299
consensus_5499#2      CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 295
consensus_5499#0      CAAAAGCTACTACGAGCTGTACATGGCCATCACGGACGAGCTGCGTCACTTCGAGCACTA 283
                      ************************************************************

consensus_5499#1      CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGCGCCGGATCTGTACGAGCATGTGCAGTA 359
consensus_5499#2      CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTA 355
consensus_5499#0      CCTGCTGGACGAGTTTCAGAAGGGCCGTAAGGTGCCGGATCTGTACGAGCATGTGCAGTA 343
                      ******************************** ***************************

consensus_5499#1      CGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 419
consensus_5499#2      CGCGGGCAATATCGTGCCGCGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 415
consensus_5499#0      CGCGGGCAATATCGTGCCACGGCTCTACCTGCTCATTACGGTCGGTTTGGTGTACATCAA 403
                      ****************** *****************************************

consensus_5499#1      GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGT 479
consensus_5499#2      GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGTGT 475
consensus_5499#0      GACGAACAGTGCGCTGAAGCGCAGCATTCTGAAGGATCTGGTGGAAATGTGTCGCGGCGT 463
                      ********************************************************* **

consensus_5499#1      ACAGCATCCCTTGGCGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 539
consensus_5499#2      ACAGCATCCCTTG-CGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 534
consensus_5499#0      ACAGCATCCCTTG-CGGGGGTTGTTTCTGCGCAACTATCTGCTGCAGTGTACGCGCAACA 522
                      ************* **********************************************

consensus_5499#1      TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 599
consensus_5499#2      TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 594
consensus_5499#0      TCCTGCCGGACACGATGCACGTTGGTGCGTCCGGGGACGAGAACGAGGGCACAGTGATCG 582
                      ************************************************************

consensus_5499#1      A-------------------------------------------------- 600
consensus_5499#2      A-------------------------------------------------- 595
consensus_5499#0      ATGCGATCGACTTTGTGCTGACCAACTTTGCCGAGATGAACAAGCTGTGGG 633
                      *