cluster # 5520

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Anopheles gambiae
cluster # 5520 cluster # 5520 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5520#0 length = 627 sequences # 3

consensus_5520#1 length = 239 sequences # 1

consensusID : consensus_5520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 627
fasta sequence

                              [CCGCGACGCTGTCCGAGATGGTGGATAAGGCGACGGACATACTTAGTACGAATCCGGAAGGGTTCTTCCTGTTTGTCGAGGGAGGACGTATAGATCATGGACATCATGACAATCAGGCCCGATATGCGATCGACGAAACGGTGGAGTTTGCGAAAGCGATCGAGCTGGCGCGGAAGAAGTTCAGTGAAGAAGATACGCTGATTGTGGTCACATCGGACCATTCGCACAGTGTCAGCTTTTCGGGTTATCCGAGCCGAGGACAAGATATTTTCGGACCGGCAGGCACCGGAAAGGATGGCATACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAGCGAAGGGAACCCGTGCGAATGTGCGTGAAATGGAAGATGCCGGCGCGGATGACTTCCGATTCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATCGTTACTTAATAAAGTATTGTAGTATGT]

[+] EMBL BM582188             [CCGCGACGCTGTCCGAGATGGTGGATAAGGCGACGGACATACTTAGTACGAATCCGGAAGGGTTCTTCCTGTTTGTCGAGGGAGGACGTATAGATCATGGACATCATGACAATCAGGCCCGATATGCGATCGACGAAACGGTGGAGTTTGCGAAAGCGATCGAGCTGGCGCGGAAGAAGTTCAGTGAAGAAGATACGCTGATTGTGGTCACATCGGACCATTCGCACAGTGTCAGCTTTTCGGGTTATCCGAGCCGAGGACAAGATATTTTCGGACCGGCAGGCACCGGAAAGGATGGCATACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAGCGAAGGGAACCCGTGCGAATGTGCGTGAAATGGAAGATGCCGGCGCGGATGACTTCCGATTCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTA                                ]
[+] EMBL BM585715             [                                                                   CCGGTTTGTCGAGGGAGGACGTATAGATCATGGACATCATGACAATCAGGCCCGATATGCGATCGACGAAACGGTGGAGTTTGCGAAAGCGATCGAGCTGGCGCGGAAGAAGTTCAGTGAAGAAGATACGCTGATTGTGGTCACATCGGACCATTCGCACAGTGTCAGCTTTTCGGGTTATCCGAGCCGAGGACAAGATATTTTCGGACCGGCAGGCACCGGAAAGGATGGCATACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAGCGAAGGGAACCCGTGCGAATGTGCGTGAAATGGAAGATGCCGGCGCGGATGACTTCCGATTCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATCG                          ]
[+] EMBL BM579654             [                                                                                                                                                                                                                                                                                 ccgCGGCAGGCACCGGAAAGGATGGCATACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAGCGAAGGGAACCCGTGCGAATGTGCGGGAAATGGAAGATGCCGGCGCGGATGACTTCCGATTCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGCGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATCGTTACTTAATAAAGTATTGTAGTATGT]




>consensus_5520#0
CCGCGACGCTGTCCGAGATGGTGGATAAGGCGACGGACATACTTAGTACGAATCCGGAAG
GGTTCTTCCTGTTTGTCGAGGGAGGACGTATAGATCATGGACATCATGACAATCAGGCCC
GATATGCGATCGACGAAACGGTGGAGTTTGCGAAAGCGATCGAGCTGGCGCGGAAGAAGT
TCAGTGAAGAAGATACGCTGATTGTGGTCACATCGGACCATTCGCACAGTGTCAGCTTTT
CGGGTTATCCGAGCCGAGGACAAGATATTTTCGGACCGGCAGGCACCGGAAAGGATGGCA
TACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAG
CGAAGGGAACCCGTGCGAATGTGCGTGAAATGGAAGATGCCGGCGCGGATGACTTCCGAT
TCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATG
CTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACA
TGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATC
GTTACTTAATAAAGTATTGTAGTATGT

consensusID : consensus_5520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [GAGGCAGAATCCGCACGAGGNCGGTTGACTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATCGTTACTTAATAAAGTATTGTAGTATGTAAATTGGAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BX468409             [GAGGCAGAATCCGCACGAGGNCGGTTGACTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATCGTTACTTAATAAAGTATTGTAGTATGTAAATTGGAAAAAAAAAAAAAAAAAAAA]




>consensus_5520#1
GAGGCAGAATCCGCACGAGGNCGGTTGACTGGAAACGCACGGTGGTGAAGATGTGGCTGT
CTATGCTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACC
GCACATGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTA
GGATCGTTACTTAATAAAGTATTGTAGTATGTAAATTGGAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5520#0      CCGCGACGCTGTCCGAGATGGTGGATAAGGCGACGGACATACTTAGTACGAATCCGGAAG 60
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      GGTTCTTCCTGTTTGTCGAGGGAGGACGTATAGATCATGGACATCATGACAATCAGGCCC 120
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      GATATGCGATCGACGAAACGGTGGAGTTTGCGAAAGCGATCGAGCTGGCGCGGAAGAAGT 180
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      TCAGTGAAGAAGATACGCTGATTGTGGTCACATCGGACCATTCGCACAGTGTCAGCTTTT 240
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      CGGGTTATCCGAGCCGAGGACAAGATATTTTCGGACCGGCAGGCACCGGAAAGGATGGCA 300
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      TACCGTACATGACGATCAGCTACGCCAATGGGCTTGGGTTCTACAAACACGTGGACGAAG 360
consensus_5520#1      ------------------------------------------------------------
                                                                                  

consensus_5520#0      CGAAGGGAACCCGTGCGAATGTGCGTGAAATGGAAGATGCCGGCGCGGATGACTTCCGAT 420
consensus_5520#1      ---------------------------------------------------GAGGCAGAA 9
                                                                             * ** 

consensus_5520#0      TCCCGGCCATGCTGCCGGTTGACCTGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATG 480
consensus_5520#1      TCCG---CACGAGGNCGGTTGAC-TGGAAACGCACGGTGGTGAAGATGTGGCTGTCTATG 65
                      ***    ** *  * ******** ************************************

consensus_5520#0      CTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACA 540
consensus_5520#1      CTTCGGGACCTTGGGCGCATCTATTTACCGGGTCGTACGAGCAGAACGTCATACCGCACA 125
                      ************************************************************

consensus_5520#0      TGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATC 600
consensus_5520#1      TGATGGCGTACGCCGCCTGCATCGGCAACGGGTTAAAAGCATGTCCGGAGAATTAGGATC 185
                      ************************************************************

consensus_5520#0      GTTACTTAATAAAGTATTGTAGTATGT--------------------------- 627
consensus_5520#1      GTTACTTAATAAAGTATTGTAGTATGTAAATTGGAAAAAAAAAAAAAAAAAAAA 239
                      ***************************