cluster # 5534

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Anopheles gambiae
cluster # 5534 cluster # 5534 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5534#0 length = 1078 sequences # 3

consensus_5534#1 length = 459 sequences # 1

consensusID : consensus_5534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1078
fasta sequence

                              [CCGGGCCAAGGAGCTCCAGTCGCTGCACGCGCTGCGCAAGCTGTTCGTGCTCGACCTGCAGGCCCGCATCAAGAAGTCGCTCAACTCGGAGGACACCGAGGACGACGGCGGCTCGCTCGCCCAGAAGCAGAAGATTTCCTTCCTCGAGAACAACCTCGAGCAGCTGACGAAGGTGCACAAGCAGCTCGTGCGGGATAATGCGGACCTGCGGTGCGAGCTGCCCAAGCTCGAGAAGCGCCTGCGGACCACGGTCGAGCGGGTGAAGGCGCTCGAGACGGCGCTGAAGGAGGCGAAGGAGGGTGCGATGCGCGACCGGAAGCGCTACCAGTACGAGGTGGACCGCATCAAGGAGGCGGTGCGCCAGAAGAATTTGGCCCGCCGCGGACCGCAAGCACAAATCGCTAAACCTATTCGAGCCGGCCAGGGGCAATATCTGTTCAAGAGTGGCGGTACGGGCGCGGCCACCACGGCACCGGGCGGCGGCACCGCCATCACGCCGAAGGCAATGGCGGACGAGAAGCGAAAGTCCCAGATTAAGGACATGGGACAGTTGAATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAGTAGTAGTGGATAGAAGCGTCAAATGATGGAGCGAAAGCAGCAAATGCACCAACAACAACAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACACAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGGAAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATTTATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCGTTCGGCTCTTTCTCTCTTGCTTTCTTGCGTGTCCCGGTCCCGGTCCCGGTCGGTTATTTA]

[+] EMBL BM634202             [CCGGGCCAAGGAGCTCCAGTCGCTGCACGCGCTGCGCAAGCTGTTCGTGCTCGACCTGCAGGCCCGCATCAAGAAGTCGCTCAACTCGGAGGACACCGAGGACGACGGCGGCTCGCTCGCCCAGAAGCAGAAGATTTCCTTCCTCGAGAACAACCTCGAGCAGCTGACGAAGGTGCACAAGCAGCTCGTGCGGGATAATGCGGACCTGCGGTGCGAGCTGCCCAAGCTCGAGAAGCGCCTGCGGACCACGGTCGAGCGGGTGAAGGCGCTCGAGACGGCGCTGAAGGAGGCGAAGGAGGGTGCGATGCGCGACCGGAAGCGCTACCAGTACGAGGTGGACCGCATCAAGGAGGCGGTGCGCCAGAAGAATTTGGCCCGCCGCGGACCGCAAGCACAAATCGCTAAACCTATTCGAGCCGGCCAGGGGCAATATCTGTTCAAGAGTGGCGGTACGGGCGCGGCCACCACGGCACCGGGCGGCGGCACCGCCATCACGCCGAAGGCAATGGCGGACGAGAAGCGAAAGTCCCAGATTAAGGACATGGGACAGTTGAATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAGTAGTAGTGGATAGAAGCGTCAAATGATGGAGCGAAAGCAGCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM580518             [                                                                              ccgCAACTCGGAGGACACCGAGGACGACGGCGGCTCGCTCGCCCAGAAGCAGAAGATTTCCTTCCTCGAGAACAACCTCGAGCAGCTGACGAAGGTGCACAAGCAGCTCGTGCGGGATAATGCGGACCTGCGGTGCGAGCTGCCCAAGCTCGAGAAGCGCCTGCGGACCACGGTCGAGCGGGTGAAGGCGCTCGAGACGGCGCTGAAGGAGGCGAAGGAGGGTGCGATGCGCGACCGGAAGCGCTACCAGTACGAGGTGGACCGCATCAAGGAGGCGGTGCGCCAGAAGAATTTGGCCCGCCGCGGACCGCAAGCACAAATCGCTAAACCTATTCGAGCCGGCCAGGGGCAATATCTGTTCAAGAGTGGCGGTACGGGCGCGGCCACCACGGCACCGGGCGGCGGCACCGCCATCACGCCGAAGGCAATGGCGGACGAGAAGCGAAAGTCCCAGATTAAGGACAT GGACAGTTGAATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAGTAGTAGTGGATAGAAGCGTCAAATGATGGAACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM602688             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAGTAGTAGTGGATAGAAGCGTCAAATGATGGAGCGAAAGCAGCAAATGCACCAACAACAACAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACACAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGGAAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATTTATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCGTTCGGCTCTTTCTCTCTTGCTTTCTTGCGTGTCCCGGTCCCGGTCCCGGTCGGTTATTTA]




>consensus_5534#0
CCGGGCCAAGGAGCTCCAGTCGCTGCACGCGCTGCGCAAGCTGTTCGTGCTCGACCTGCA
GGCCCGCATCAAGAAGTCGCTCAACTCGGAGGACACCGAGGACGACGGCGGCTCGCTCGC
CCAGAAGCAGAAGATTTCCTTCCTCGAGAACAACCTCGAGCAGCTGACGAAGGTGCACAA
GCAGCTCGTGCGGGATAATGCGGACCTGCGGTGCGAGCTGCCCAAGCTCGAGAAGCGCCT
GCGGACCACGGTCGAGCGGGTGAAGGCGCTCGAGACGGCGCTGAAGGAGGCGAAGGAGGG
TGCGATGCGCGACCGGAAGCGCTACCAGTACGAGGTGGACCGCATCAAGGAGGCGGTGCG
CCAGAAGAATTTGGCCCGCCGCGGACCGCAAGCACAAATCGCTAAACCTATTCGAGCCGG
CCAGGGGCAATATCTGTTCAAGAGTGGCGGTACGGGCGCGGCCACCACGGCACCGGGCGG
CGGCACCGCCATCACGCCGAAGGCAATGGCGGACGAGAAGCGAAAGTCCCAGATTAAGGA
CATGGGACAGTTGAATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAG
TAGTAGTGGATAGAAGCGTCAAATGATGGAGCGAAAGCAGCAAATGCACCAACAACAACA
GCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACACA
GATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGGAA
GCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATTTA
TAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCGTT
CGGCTCTTTCTCTCTTGCTTTCTTGCGTGTCCCGGTCCCGGTCCCGGTCGGTTATTTA

consensusID : consensus_5534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTAATGGTGAGCGGGCGGATTTAACAAGTACGAGCGAAAGCAGCAAATGCACCAACAACAACAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACACAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGGAAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATTTATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCGCTCGGCTCTTTCT]

[+] EMBL BM606664             [CCGCCCACGCGTCCGCCCACGCGTCCGGTAATGGTGAGCGGGCGGATTTAACAAGTACGAGCGAAAGCAGCAAATGCACCAACAACAACAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACACAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGGAAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATTTATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCGCTCGGCTCTTTCT]




>consensus_5534#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTAATGGTGAGCGGGCGGATTTAACAAGTACGA
GCGAAAGCAGCAAATGCACCAACAACAACAGCAACAACAGCAAATGCCGCTGCGGAAGAA
CTAGAGACGGAGAAGAGAGAGACACACACAGATTCATTACACAAAATCGTGCAAAACCCG
ACAATGAAAAAAAAAACCGGTATCTAGGAAGCTATTACAACGTGCGACAGGAAAGCAGGC
CCCCTCCCTCGCCCCACGAAAGCTCATTTATAGACATACTTACAGACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACTATGAAATCACCGCTCGGCTCTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5534#0      CCGGGCCAAGGAGCTCCAGTCGCTGCACGCGCTGCGCAAGCTGTTCGTGCTCGACCTGCA 60
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      GGCCCGCATCAAGAAGTCGCTCAACTCGGAGGACACCGAGGACGACGGCGGCTCGCTCGC 120
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CCAGAAGCAGAAGATTTCCTTCCTCGAGAACAACCTCGAGCAGCTGACGAAGGTGCACAA 180
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      GCAGCTCGTGCGGGATAATGCGGACCTGCGGTGCGAGCTGCCCAAGCTCGAGAAGCGCCT 240
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      GCGGACCACGGTCGAGCGGGTGAAGGCGCTCGAGACGGCGCTGAAGGAGGCGAAGGAGGG 300
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      TGCGATGCGCGACCGGAAGCGCTACCAGTACGAGGTGGACCGCATCAAGGAGGCGGTGCG 360
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CCAGAAGAATTTGGCCCGCCGCGGACCGCAAGCACAAATCGCTAAACCTATTCGAGCCGG 420
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CCAGGGGCAATATCTGTTCAAGAGTGGCGGTACGGGCGCGGCCACCACGGCACCGGGCGG 480
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CGGCACCGCCATCACGCCGAAGGCAATGGCGGACGAGAAGCGAAAGTCCCAGATTAAGGA 540
consensus_5534#1      ------------------------------------------------------------
                                                                                  

consensus_5534#0      CATGGGACAGTTGAATGCATTTTGGCGAGTAGCGAACAAAATGCGCGGCGGGTGGTTAAG 600
consensus_5534#1      --------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGG 28
                                                      *   * *   *  ** *     **   *

consensus_5534#0      TAGTAGTGGATAGAAGCGTCAAATGATG--GAGCGAAAGCAGCAAATGCACCAACAACAA 658
consensus_5534#1      TAATGGTGAGCGGGCGGATTTAACAAGTACGAGCGAAAGCAGCAAATGCACCAACAACAA 88
                      ** * ***    *  *  *  **  *    ******************************

consensus_5534#0      CAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACA 718
consensus_5534#1      CAGCAACAACAGCAAATGCCGCTGCGGAAGAACTAGAGACGGAGAAGAGAGAGACACACA 148
                      ************************************************************

consensus_5534#0      CAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGG 778
consensus_5534#1      CAGATTCATTACACAAAATCGTGCAAAACCCGACAATGAAAAAAAAAACCGGTATCTAGG 208
                      ************************************************************

consensus_5534#0      AAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATT 838
consensus_5534#1      AAGCTATTACAACGTGCGACAGGAAAGCAGGCCCCCTCCCTCGCCCCACGAAAGCTCATT 268
                      ************************************************************

consensus_5534#0      TATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACA 898
consensus_5534#1      TATAGACATACTTACAGACACACACACACACACACACACACACACACACACACACACACA 328
                      ************************************************************

consensus_5534#0      CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA 958
consensus_5534#1      CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA 388
                      ************************************************************

consensus_5534#0      CACACACACACACACACACACACACACACACACACACACACACACACTATGAAATCACCG 1018
consensus_5534#1      CACACACACACACACACACACACACACACACACACACACACACAC--TATGAAATCACCG 446
                      *********************************************  *************

consensus_5534#0      TTCGGCTCTTTCTCTCTTGCTTTCTTGCGTGTCCCGGTCCCGGTCCCGGTCGGTTATTTA 1078
consensus_5534#1      CTCGGCTCTTTCT----------------------------------------------- 459
                       ************