cluster # 5537

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Anopheles gambiae
cluster # 5537 cluster # 5537 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5537#0 length = 651 sequences # 3

consensus_5537#1 length = 623 sequences # 1

consensusID : consensus_5537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 651
fasta sequence

                              [CCGCCGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAGGCCGCCCACTGTCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG]

[+] EMBL BM625576             [   CCGCTTTCGTTGAAGTAACATGGGCGTACTAAGGCAAGCCGGCCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTATGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAGGCCGCCCACTGTCGAAGTGCTAC                                                                                             ]
[+] EMBL BM626652             [   CCGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM580846             [ccgttcCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGA   AGTGTTAAAGGCCG CCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG]




>consensus_5537#0
CCGCCGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGAT
GTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAG
CAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAAT
GTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAAC
GTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCAC
CGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTC
GAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAA
AGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAACAGGC
GTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAGGCCGC
CCACTGTCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGATGCGC
GAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG

consensusID : consensus_5537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGTGTTAAAGGCCGCCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGAT]

[+] EMBL BM650296             [CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTCGTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGACTGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCGGCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATTGTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGCAGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAATCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTACAGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAACAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGTGTTAAAGGCCGCCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCTGATGTGATGCGCGAGTTTATGCTGTGTGCCGGGAT]




>consensus_5537#1
CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTC
GTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGAC
TGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCG
GCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATT
GTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGC
AGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAA
TCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTAC
AGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAA
CAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGTGTTAAAGGCC
GCCACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCTGATGTGATGCGC
GAGTTTATGCTGTGTGCCGGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5537#0      ----CCGC-CGCTTTCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTC 55
consensus_5537#1      CCGCCCACGCGTCCGCGTTTAAGTAACATGGGCGTTCTAAGGCAAGCCGACCTGTTGGTC 60
                          ** * **    *********************************************

consensus_5537#0      GTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGAC 115
consensus_5537#1      GTGATGTTGGCAGCAGTTGTGCTTCCATTCGCCTGTGCTCAAAGGCTGAAGGATAAAGAC 120
                      ************************************************************

consensus_5537#0      TGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCG 175
consensus_5537#1      TGGAGCAACATGATAGTGGGTGGTATGAAGGTGGAAATTGAAGCAGTACCTTACCAGGCG 180
                      ************************************************************

consensus_5537#0      GCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATT 235
consensus_5537#1      GCAATGTTGTTCTCGGAATCGGTGGAATGTGGGGGAAGCATTATCGGACCGCGCTGGATT 240
                      ************************************************************

consensus_5537#0      GTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGC 295
consensus_5537#1      GTAACGTCGCGCCACTGCATCAACCAGCACGAACCGGTCAACTATGCATTTGCAGTCGGC 300
                      ************************************************************

consensus_5537#0      AGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAA 355
consensus_5537#1      AGCACCGACCCATACAAGGGCAAAATAGTAAAGGTGGAGAAGTTCTTTGTTCCTCCGGAA 360
                      ************************************************************

consensus_5537#0      TCGTCGAACGATGATAGATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTAC 415
consensus_5537#1      TCGTCGAACGATGATACATACGATATAGCGTTGGCGAAGCTGGCAGAATCTTTGCAGTAC 420
                      **************** *******************************************

consensus_5537#0      AGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCGAAGGATGCAATCGTCCCTGGAAAA 475
consensus_5537#1      AGCAAAGCAGTGCAGTGTATTCCGCTACTATCGTCCAAGGATGCAATCGTCCCTGGAAAA 480
                      *********************************** ************************

consensus_5537#0      CAGGCGTACATCTCTGGCTTTGGAGACACAGAGGAAAACAATGCTGAAGTAGTGTTAAAG 535
consensus_5537#1      CAGGCGTACATCTCTGGCTTTGGAGTCACAGAGGAGAACAATGCTGAAGT---GTTAAAG 537
                      ************************* ********* **************   *******

consensus_5537#0      GCCGCCCACTGTCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCCCTGATGTGA 595
consensus_5537#1      GCCGCC-ACCATCGAAGTGCTACCGTGGCAAACCTGTCAGCAAGTTTATCC-TGATGTGA 595
                      ****** **  **************************************** ********

consensus_5537#0      TGCGCGAGTTTATGCTGTGTGCCGGGATTTTGGCTGGTGGGGTGGACTCGTGCCAG 651
consensus_5537#1      TGCGCGAGTTTATGCTGTGTGCCGGGAT---------------------------- 623
                      ****************************