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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence
[TTCGAGGAAGCCATCACGAAAACCTAGTTTA-CCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACC-GGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAA-CACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAACATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTGCGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGCATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGATGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACGAGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACAGTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATGTGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTTGGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCTGCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAGCGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGCCCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTCCGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG]
[+] EMBL BX624988 [TTCGAGGAAGCCATCACGAAAACCTAGTTTATCCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACCGGGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAANAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTC ]
[+] EMBL CNS08YX6 [ gactaTTA GCGTTGTCTTCCGAAATGGATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGCGTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGATGCACC GGAGTAAAGATAGCGAAGGAAAACAGCATTCCGTATTCTGTTTGTGAAGATTGCCACAGCAAACTGACACTCTTTACCACCTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTCGCTGCAGGAAATGGACAGTAACGACAAGACACGGCCTGCAATGGGTGACCACATCGGGTATATTGCAACATACGAGGGACCAACGTTCCAGAGCAAGATAGCGAAGGTGGAATATCTCGAGCAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATTCAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATCCACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTGAACAGGAAAATGAAGAAAAGGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGAGGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTTTCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAA CACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAACATCGG ]
[-] EMBL CNS08YX7 [ CTCTCCAGGATAAGAACTCCCGCCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGA CTTCCGGTCCATATAGTATCGCACACGAAGGAGCGCAAGCACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACGTACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTGTGCAATCGCGGTTTTACGCAACGAACCGG TAAGAAGCACACATGCGGGCACAGCACAACATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTGCGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGCATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGATGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACGAGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACAGTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATGTGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTTGGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCTGCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAGCGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGCCCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTCCGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG]
consensusID : consensus_5541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATGGAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGTGTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGATGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATTGCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTCGGCTGCAGGGAAATGGACAGTTAACGACAGACACGGCTGCAATGGGGTGACCACATCGGGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGACATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGGCAGCCTTTGAAACNGGGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAGGGGAGTCACATTGTAAGGCCACTCCGGTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGGCATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGNTGGAACCAGGGANNCACACTGANAAGCACACAAGGGCTTTCC]
[+] EMBL BX468588 [AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATGGAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGTGTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGATGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATTGCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCCCGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTCGGCTGCAGGGAAATGGACAGTTAACGACAGACACGGCTGCAATGGGGTGACCACATCGGGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGACATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGGCAGCCTTTGAAACNGGGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAGGGGAGTCACATTGTAAGGCCACTCCGGTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGGCATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGNTGGAACCAGGGANNCACACTGANAAGCACACAAGGGCTTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5541#0 -----------TTCGAGGAAGCCATCACGAAAACCTAGTTTACCGTTGTCTTCCGAAATG 49
consensus_5541#1 AGATCGGCCGAGGCGTGNAAAGCAACACGAAAACTAGCTCGTCCGTTGTCGTCTGAAATG 60
** * ** ** ********* * ******** ** ******
consensus_5541#0 GATTCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTTTGCGAAGGGGAAGGC 109
consensus_5541#1 GAATCAATTTTAGATGAAGTTCGCTGTGTTTGTCGGCTATGTCTGTGCGAAGGTGAGGGT 120
** ***************************************** ******** ** **
consensus_5541#0 GTGTTGGTTCCGGTCTGTAAAATACTCGACCGTACCTTAACGGTGGACGATATCGAACGA 169
consensus_5541#1 GTGTTGGTTCCGGTCAATAAAATACTCGATCTTACCTTAACGGTGGACGATATCGAACGA 180
*************** ************ * ****************************
consensus_5541#0 TGCACCGG-AGTAAAGATAGCGAAGGAAAACAGCATTCCG-TATTCTGTTTGTGAAGATT 227
consensus_5541#1 TGCACTGGCGGTAAAGATAGCGAAGGAAAACAGCATTCCGGTATTCTGTTTGTGAAGATT 240
***** ** ****************************** *******************
consensus_5541#0 GCCACAGCAAACTGACACTCTTTACCACC-TTTCGTACCTTCTGCCTATCCAATGATGCC 286
consensus_5541#1 GCCACAGNAAACTGACACTCTTTAGCACCGTTTCGTACCTTCTGCCTATCCAATGATGCC 300
******* **************** **** ******************************
consensus_5541#0 CGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGTC- 345
consensus_5541#1 CGATTTCGAGAACTGTTTGCAGCGATATTTGCAAATGTTCCATCGGACGAAGAACAGGTC 360
*********************************************************
consensus_5541#0 -GCTGCAGG-AAATGGACAGT-AACGACAAGACACGGCCTGCAATGGG-TGACCACATCG 401
consensus_5541#1 GGCTGCAGGGAAATGGACAGTTAACGACA-GACACGGC-TGCAATGGGGTGACCACATCG 418
******** *********** ******* ******** ********* ***********
consensus_5541#0 GGTATATTG-CAACA-TACGAGGGACCAACGTT-CCAGAGCAAGATAGCGAAGGTGGAA- 457
consensus_5541#1 GGTATATTGGCAACAATACGAGGGACCAACGTTTCCAGAGCAAGATAGCGAANGTGGGAC 478
********* ***** ***************** ****************** **** *
consensus_5541#0 -TATCTCGAG-CAGGACGACAGTTCATCGGACTGCAGCAGCTTGCAGGGGCAAGATAATT 515
consensus_5541#1 ATATCTCGAGGCAGGGACCGACCAGGTTCCACTCCGGNAACTTGCAGG--CAGCCT--TT 534
********* **** * * *** * * * ******** ** * **
consensus_5541#0 CAGACGAAGAGGATAATTTAGCCATCGTCGTGGAAGGCAATGAATCTTACGGGGAGCATC 575
consensus_5541#1 GAAACNG-GGGGCCAAAGGANTAAGTTTCCAGGAGCGAAAGAAG----GGGAGTCACATT 589
* ** * ** ** * * ** *** * ** * * * ***
consensus_5541#0 CACAGGGTCGCAGCGTATCCCCGGACAGAGAAGCTAGTG--AACAGGAAAATGAAGAAAA 633
consensus_5541#1 -GTAAGGCCACTCCG-GTCCGTGGGAAAGGGCGCAANTGGAAACTCTTTACCGGGGGAGG 647
* ** * * ** *** ** * * ** * ** *** * * * *
consensus_5541#0 GGCTTCCGTTACGGACTGTGGACGCGGGGTGGACAGCGTCGGAAGTGCTTCTGACATAGA 693
consensus_5541#1 CATTCCCACCAGAGGGTTCGCAAGCAGGTATACCCCCGGGAACCANGGAGANAGCTGAGN 707
* ** * * * * * ** ** * ** * * **
consensus_5541#0 GGACAACGATGAGGAGAACGAGCGAACCCAAAAGAATGCTCTCCAGGATAAGAACTCCCG 753
consensus_5541#1 TGGAACCAGGGANNCACACTGANAAGCACACAAGG--GCTTTCC---------------- 749
* * * ** ** * * ** *** *** ***
consensus_5541#0 CCGGCAGCTGTGCCCGATGTGCGGTAAGCTGGTGTACGACCTTCCGGTCCATATAGTATC 813
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 GCACACGAAGGAGCGCAACACGTCTGTCCCCATTGTTCCATGGCTTATGGGCGCAAAACG 873
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 TACCTGAAGATGCACGTGGAAGCGGTGCACCTGAAGAAGGTGGTCAAAACGTGCGAACTG 933
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 TGCAATCGCGGTTTTACGCAACGAACCGGCTACGAAGCACACATGCGGGCACAGCACAAC 993
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 ATCGGAAAATGGTACGAATGCAAACTGTGCGATATGCAGTTCCGGCACCCGGGTGGCTTG 1053
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 CGGGAGCATAATAATCGCAAGCACAACGAAAAATCCAACTGCTCGTGCCCGACCTGTGGC 1113
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 ATGGAGTTTCAAAGCAAAGTTGGGCTGAAAAATCACAGCAGAGTGACTCCGTGGTGCAGA 1173
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 TGTTTGCGTGCAAGCACTGCCCGAAACGGTTCAAAAGTCCCAACGCGCACAAGCAACACG 1233
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 AGCTTACCCATTTGGGCGTTACCTTTCCCTGTCCGGTTTGTGCGAAAACGTACCGATACA 1293
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 GTCAAAACCTTACGGCTCATATGCGAAAGCACAAAACCAAAGATAGTTTATAGCCGGATG 1353
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 TGCAGGATGATGGGGAACCTTTTAAGCGAAATAAACTCTAACGGAACTGAAGCTCTCCTT 1413
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 GGCATACTGAAGGTACGGATAATGAACTACGTAGGGGTTGGCGAACCTCGTAACTCTTCT 1473
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 GCATATTTGTCATGGATATTCGAGCGACATCAGCTTCTTGTCCTGCAAATAGGAGAATAG 1533
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 CGGTTTGAAGTCGTTAAGCAGGACGGTCTCTACCATTGGATGCGATAAGCGTATATCAGC 1593
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 CCTGAGGCTGCATAACGAGTTCAGGTGTACCAGAGACTAGGTCCTCGGCGGCCAGTAGTC 1653
consensus_5541#1 ------------------------------------------------------------
consensus_5541#0 CGTAAACGAATTACACATCTACCCTTGTTGAGACAGCAATG 1694
consensus_5541#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||