cluster # 5542

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Anopheles gambiae
cluster # 5542 cluster # 5542 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5542#0 length = 619 sequences # 2

consensus_5542#1 length = 607 sequences # 1
consensus_5542#2 length = 581 sequences # 1

consensusID : consensus_5542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [CCGCAAAGCACCAAGCATCACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG]

[+] EMBL BM602107             [CCGCAAAGCACCAAGCATCACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAA                                         ]
[+] EMBL BM581095             [                         ccgCCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG]




>consensus_5542#0
CCGCAAAGCACCAAGCATCACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGC
CACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGAT
AAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCG
AAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTT
ATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGA
AACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATT
TGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAA
GTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGG
AACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGA
GGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGC
CCTGTTCCAGTATCAGCTG

consensusID : consensus_5542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CCGCGGACGCGTGGGTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGCTAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT]

[+] EMBL BM610425             [CCGCGGACGCGTGGGTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGCTAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT]




>consensus_5542#1
CCGCGGACGCGTGGGTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGG
TTCTGATAAATTCTTGGAGTGATCGCGATTGCGTGCGTGCTGTATTGTTGTGTTCTGATC
CGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGT
TATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAA
CGGAGGAAACGTTTGATTTTTCTAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTG
TTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATG
AATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCA
AAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAA
TCAAAGAGGTTTATTTTGAAGCTTCAGACGCACTACCGGTGAGAAACTTTAAGAAAGGAA
TATGTGCCCTGTTCCAGTATCAGCTGCTAGATGGCACGTACAGTGAGGTGGATCCTTCTG
GGGGAGT

consensusID : consensus_5542#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG]

[+] EMBL BM653304             [CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACACGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAAGTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCGATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAAAGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGGCTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACGTAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAACGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGCAAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAATCTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG]




>consensus_5542#2
CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACA
CGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAA
GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG
ATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA
AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG
CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACG
TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA
CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC
AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT
CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5542#0      -----------------------------------CCGCAAAGCACCAAGCAT-----CA 20
consensus_5542#2      CCGGATGAGACGATTTATGTTGGGAGCAACGGTTTAAACTAATCGTCGATCATTCACACA 60
consensus_5542#1      ------------------------------------------------------------
                                                                                  

consensus_5542#0      CGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAA 80
consensus_5542#2      CGAAATCACCGAAACAGAGAGTGGAACATGGTCGTGAGGCCACAAATTTAAGCGCTGTAA 120
consensus_5542#1      ---------------------------------CCGCGGACGCGTGGGTAAGCGCTGTAA 27
                                                         * ** * *     ************

consensus_5542#0      GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 140
consensus_5542#2      GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 180
consensus_5542#1      GTGGCACAGTGAATACATTGCTAGTGTAAGTGGTTCTGATAAATTCTTGGAGTGATCGCG 87
                      ************************************************************

consensus_5542#0      ATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 200
consensus_5542#2      ATTGTGTGCGTGCGGTGTTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 240
consensus_5542#1      ATTGCGTGCGTGCTGTATTGTTGTGTTCTGATCCGCTTCGAAAGAGTTGAATGACCAGAA 147
                      **** ******** ** *******************************************

consensus_5542#0      AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 260
consensus_5542#2      AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 300
consensus_5542#1      AGATGAAGTTGTATTTGCTTCTAACAATCCTGTTATCTTTATTCGAGTTCGGATACGTGG 207
                      ************************************************************

consensus_5542#0      CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACG 320
consensus_5542#2      CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGCACGGAGGAAACGTTTGATTTTTCCAACG 360
consensus_5542#1      CTCCAGCCTTCGGAGATGCCTTTCGCGTTGGAACGGAGGAAACGTTTGATTTTTCTAACG 267
                      ******************************* *********************** ****

consensus_5542#0      TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 380
consensus_5542#2      TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 420
consensus_5542#1      TAGTTCATGTGGGCAACGGTAAAAATGCAACTGTTCCATTTGGGTATCAAACACATGCAA 327
                      ************************************************************

consensus_5542#0      CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 440
consensus_5542#2      CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 480
consensus_5542#1      CGGTTATTGTGGGATCGGTGTGGGGCGATGATGAATCAAAGTTATTGAAAATTCAGGTGC 387
                      ************************************************************

consensus_5542#0      AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 500
consensus_5542#2      AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 540
consensus_5542#1      AAAATCCCTCGCTTGTTAGCATTCCAGATGGCAAAGTTGGAACGATGATTGGAGCAGAAT 447
                      ************************************************************

consensus_5542#0      CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAG 560
consensus_5542#2      CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAG------------------- 581
consensus_5542#1      CTCCGTTTTACGCGTGGTGGAATTTAGGGCAAATCAAAGAGGTTTATTTTGAAGCTTCAG 507
                      *****************************************                   

consensus_5542#0      ACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTG- 619
consensus_5542#2      ------------------------------------------------------------
consensus_5542#1      ACGCACTACCGGTGAGAAACTTTAAGAAAGGAATATGTGCCCTGTTCCAGTATCAGCTGC 567
                                                                                  

consensus_5542#0      ----------------------------------------
consensus_5542#2      ----------------------------------------
consensus_5542#1      TAGATGGCACGTACAGTGAGGTGGATCCTTCTGGGGGAGT 607