cluster # 5543

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Anopheles gambiae
cluster # 5543 cluster # 5543 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5543#0 length = 954 sequences # 3

consensus_5543#1 length = 341 sequences # 1

consensusID : consensus_5543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 954
fasta sequence

                              [CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCAGCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGCCCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT]

[+] EMBL BM618627             [CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCAGCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCT                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM581101             [                                              CCGCCCACGCGTCCGCCCACGCGTCCGCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAATAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCAC                                                                                                                                                                                                               ]
[+] EMBL BM630320             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCGGGAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGCCCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT]




>consensus_5543#0
CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCA
GCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACA
CAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAA
CGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGT
AGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGA
GCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTC
GGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGC
GACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGT
AAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAAC
CGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCA
ACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGC
GAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTT
CGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGCCCA
ACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGATGAG
CTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCAT
CTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT

consensusID : consensus_5543#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [GGCAAGCATCGGTNTAAGGAAGGACGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGTGCGCAAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTGCTCCAGATCCTGTCGCTGCTGAACAATCTCGAGGCCCTGTCGCAGGACCATGAGATTGCCGGCGACGACNGTGAGCCTGGAGTC]

[+] EMBL BX468960             [GGCAAGCATCGGTNTAAGGAAGGACGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGTGCGCAAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTGCTCCAGATCCTGTCGCTGCTGAACAATCTCGAGGCCCTGTCGCAGGACCATGAGATTGCCGGCGACGACNGTGAGCCTGGAGTC]




>consensus_5543#1
GGCAAGCATCGGTNTAAGGAAGGACGGCTGGACCGCATACCGAAAAGGAGCACGATGAGC
TGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATC
TGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATAC
CGACGGACGATGTGCGCAAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGG
AGGACAAGCTGTGTCTGCTCCAGATCCTGTCGCTGCTGAACAATCTCGAGGCCCTGTCGC
AGGACCATGAGATTGCCGGCGACGACNGTGAGCCTGGAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5543#0      CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCA 60
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      GCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACA 120
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      CAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAA 180
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      CGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGT 240
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      AGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGA 300
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      GCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTC 360
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      GGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGC 420
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      GACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGT 480
consensus_5543#1      ----------------------------------GGCAAGCATCGGTNT--AAGGAAGGA 24
                                                        **   *     *      * ** ** 

consensus_5543#0      AAGCTGG--CGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCA 538
consensus_5543#1      CGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCG 84
                        *****  ***  * * *   *****  ****** **     **  *  **      * 

consensus_5543#0      ACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGG 598
consensus_5543#1      ACTCCGGCGTCAC-CTCACCCAACAGCC-ATC-ACCATCTGGA---GGACCAGCAGAGCG 138
                      **   * *  *** **  ** *  * *  *** **** *****   *** * *  **  *

consensus_5543#0      CAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGC 658
consensus_5543#1      GCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGT-GCGC 197
                          **   *  ** **** *    *   *** *  **       *  **   **   **

consensus_5543#0      GCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCG-CGAGCAGAACGAACTGCTCGAG 717
consensus_5543#1      AAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTG 257
                        * **   * *  *   *  **   **** *** ** **** ** ** * ***     *

consensus_5543#0      TTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGC 777
consensus_5543#1      CTCCAGATCCTGTCGCTGCTGAACAATCTCGA-----GGCCCTGTCGCAGGACCATGAGA 312
                       * *  *** *   ***   * * *  * ***     ** *    ** *  * *   ** 

consensus_5543#0      CCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGAT 837
consensus_5543#1      TTGCCGG-CGACGACNGTGAGCCTGGAGTC------------------------------ 341
                          *** ** **   *   * *    * *                              

consensus_5543#0      GAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCAC 897
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      CATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT 954
consensus_5543#1      ---------------------------------------------------------