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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 880 fasta sequence
[CCGGGCTGTAAACAACGTAAAATCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG]
[+] EMBL BM615110 [CCGGGCTGTAAACAACGTAAAATCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGT ]
[+] EMBL BM634996 [ ccgGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG]
consensusID : consensus_5549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTGTTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTCTGGCTGCACTGTGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTGCTGCTGGCAAACGTGCGACGGTATCGCGAGTTTTTATACGAGCGGAAAGAGCTCGTCAAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAATAGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCAACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAGCAACGTACAGGAGCACTT]
[+] EMBL BX602056 [GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTGTTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTCTGGCTGCACTGTGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTGCTGCTGGCAAACGTGCGACGGTATCGCGAGTTTTTATACGAGCGGAAAGAGCTCGTCAAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAATAGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCAACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAGCAACGTACAGGAGCACTT]
consensusID : consensus_5549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAA]
[+] EMBL BM581406 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5549#0 -----------------CCGGGCTGTAAACAACGTA--AAATCTCCTCCAAAGCCCTACT 41
consensus_5549#2 -------------CCGCCCACGCGTCCGCCCACGCG--TCCGCTCCTCCAAAGCCCTACT 45
consensus_5549#1 GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTG 60
* * * *** ** ****
consensus_5549#0 TTTTCCAGCCAAACCGTACTC--AAGAGGCAGTAA----AATAGAGATTACTAGTTCTAA 95
consensus_5549#2 TTTTCCAGCCAAACCGTACTC--AAGAGGCAGTAA----AATAGAGATTACTAGTTCTAA 99
consensus_5549#1 TTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTT 120
******** * ** ** **** * * * * ** *
consensus_5549#0 AACGCCGATTTTCCGGAT-TCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGC 154
consensus_5549#2 AACGCCGATTTTCCGGAT-TCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGC 158
consensus_5549#1 AGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTC--TGGCTGCACTGTGAGTGTGA 178
* * ** * * ** ** ** * ** *** ** * *** * * *
consensus_5549#0 GCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACG 214
consensus_5549#2 GCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACG 218
consensus_5549#1 GTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAAT--ACCAAA 236
* * **** ** * * * * * ** *** *** * * * *
consensus_5549#0 GGTTGTGTTTTCTTTC-TGCTCGGCAAAG--GCAATTGATACGGCTCGAAACGCCTAATC 271
consensus_5549#2 GGTTGTGTTTTCTTTC-TGCTCGGCAAAG--GCAATTGATACGGCTCGAAACGCCTAATC 275
consensus_5549#1 GATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATC 296
* *** * * * ** ** ** ** * * * ** * *****
consensus_5549#0 ATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCG 331
consensus_5549#2 ATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCG 335
consensus_5549#1 AAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAA 356
* ** * * * ** ** *** *** * * ** *
consensus_5549#0 AAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGAT----CTGAGTGT-GCGTGT 386
consensus_5549#2 AAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGAT----CTGAGTGT-GCGTGT 390
consensus_5549#1 CACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACG- 415
* * * ** * * * * * ** * * * *** ** *
consensus_5549#0 GTGTAAAAGTGGAAGAGTTTTATGA--------CCTCTCTCTGTTTCGATTCTAATGTGA 438
consensus_5549#2 GTGTAAAAGTGGAAGAGTTTTATGA--------CCTCTCTCTGTTTCGATTCTAATGTGA 442
consensus_5549#1 GTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAG 475
*** * ** * ** * * ** ** ** * * * * *
consensus_5549#0 CTCTTTTTTCCTGTCCA--CGATAAGATCT--CGCCACCCCCACGTTGTC--TGGCTGCA 492
consensus_5549#2 CTCTTTTTTCCTGTCCA--CGATAAGATCT--CGCCACCCCCACGTTGTC--TGGCTGCA 496
consensus_5549#1 TTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTG 535
* * * * ** * *** ** ** * **** ** * * *
consensus_5549#0 CTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAAC----C 548
consensus_5549#2 CTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAAC----C 552
consensus_5549#1 CTGCTGGCAAACGTGCGACGGTATC---GCGAGTTTTTATACGAGCGGAAAGAGCTCGTC 592
*** * *** *** **** * ** * ** *** * ** * * *
consensus_5549#0 AAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAAT 608
consensus_5549#2 AAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAAT 612
consensus_5549#1 AAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAAT 652
**** ****** * * ** * * ** ** * * * * *****
consensus_5549#0 GGCGACACTTAATCAAGCGCTCGTGT--TGGCTCTCGAAAGCAAC----CCGAAGGAAGC 662
consensus_5549#2 GGCGACACTTAATCAAGCGCTCGTGT--TGGCTCTCGAAAGCAAC----CCGAA------ 660
consensus_5549#1 AGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCA 712
* ** ** *** * * * * **** ** *
consensus_5549#0 GTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCA 722
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAG 772
consensus_5549#0 GAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTC 782
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 CAACGTACAGGAGCACTT------------------------------------------ 790
consensus_5549#0 GGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCT 842
consensus_5549#2 ------------------------------------------------------------
consensus_5549#1 ------------------------------------------------------------
consensus_5549#0 CACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG 880
consensus_5549#2 --------------------------------------
consensus_5549#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||