cluster # 5555

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Anopheles gambiae
cluster # 5555 cluster # 5555 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5555#0 length = 1026 sequences # 2

consensus_5555#1 length = 680 sequences # 1
consensus_5555#2 length = 250 sequences # 1

consensusID : consensus_5555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1026
fasta sequence

                              [ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAAAACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGCGCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTATCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGTCGTCTCCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCATTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGGTCNGCTGGAAAATGTAGCAAGAGAAAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAGAAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAATAGCGAAGATC]

[+] EMBL BX624977             [ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAAAACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGCGCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTATCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGTCGTCTCCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCATTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGGTCNGCT                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM612028             [                                                                                                                                                                                                                                                                                                                                                                       ccgGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTGGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAAACACACACAACACA TTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTCCGGCTGGAAAATGTAGCAAGAGAAAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAGAAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAATAGCGAAGATC]




>consensus_5555#0
ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAA
AACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGC
GCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTA
TCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGTCGTCTCCGGATTGGTCCTTGCGGA
AACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCC
TACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTA
TCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGACAAC
ACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCG
GAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGC
TCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAG
CTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCATTCC
TTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCTAATC
AGTAAGACCGATGTACGGGGGGTCNGCTGGAAAATGTAGCAAGAGAAAGAGAGAGAGACT
CTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTA
AAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAGAAGG
CAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGGTGTT
GACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAATAGCG
AAGATC

consensusID : consensus_5555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTGGTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACAGAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAAG]

[+] EMBL BM581776             [CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTGGTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCATTCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAGAGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACAGAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGGTGTTGACAGCTTGCAAAGCAACTTGAAAAG]




>consensus_5555#1
CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTGGTTATCGGAT
AAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTA
TGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTGCGCGGAAAGA
AGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAGGAGCTCAGTG
ACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACACTGAGCTGAAG
AAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCATTCCTTTGGTT
CTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTAATCAGTAAGA
CCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAGAGACTCTTTG
CAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGACGTAAAGCT
CTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACAGAAAGCAGAA
CTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGGTGTTGACAGC
TTGCAAAGCAACTTGAAAAG

consensusID : consensus_5555#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [CCGCGGACGCGTGGGCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT]

[+] EMBL BM600970             [CCGCGGACGCGTGGGCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCACTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT]




>consensus_5555#2
CCGCGGACGCGTGGGCGGATTGGTCCTTGCGGAAACCCAGAGTAACAGCTTCTGGGGACA
CAATAATGATTTTGTACATCATTATTGCCATCCTACAACGGAGAGTTGATGCAACACTCA
CTCACACATACACACACCCGGTGATCGTGGTTATCGGATTAACGACTGATTGTAAAATCC
TGAAGAGAAATTGATAATTCGTATTAGGACAACACCTTACGTTTTGAGTTCTATCCTACC
GGGTTGGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5555#0      ACGGAGGTTTCATGTTGGTCTCTCTGTACCTTTTTTTCATCTTCATTCGATATGAATTAA 60
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      ------------------------------------------------------------
                                                                                  

consensus_5555#0      AACCAACGTGAAACTGGAACCGGTAACCCCGAAACACGGTGCAACGATCCGCGCAGAAGC 120
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      ------------------------------------------------------------
                                                                                  

consensus_5555#0      GCAAAAAACAACCAAAAAAGCCACGAACTTCAATCTAAATTACTGACTCAAAACACACTA 180
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      ------------------------------------------------------------
                                                                                  

consensus_5555#0      TCGTGCTTTTTGCACTCCGCATAGGAGATCCTGGGT-CGTCTCCGGATTGGTCCTTGCGG 239
consensus_5555#2      ----------------------------CCGCGGACGCGTGGGCGGATTGGTCCTTGCGG 32
consensus_5555#1      ------------------------------------------------------------
                                                                                  

consensus_5555#0      AAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATC 299
consensus_5555#2      AAACCCAGAGTAACAGCTTCTGGGGACACAATAATGATTTTGTACATCATTATTGCCATC 92
consensus_5555#1      ------------------------------------------------------------
                                                                                  

consensus_5555#0      CTACAACGGAGAGTTGATGCAAC-ACTCACTCA--CACATACACACACCCGGTGATCGTG 356
consensus_5555#2      CTACAACGGAGAGTTGATGCAAC-ACTCACTCA--CACATACACACACCCGGTGATCGTG 149
consensus_5555#1      ----------CCGCCCACGCGTCCGCCCACGCGTCCGCATACACACACCCGGTGATCGTG 50
                                  *   * **  *  * *** *   * ***********************

consensus_5555#0      GTTATCGGATTAACGACTGATTGTAAAATTCTGAAGAGAAATTGATAATTCGTATTAGGA 416
consensus_5555#2      GTTATCGGATTAACGACTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGA 209
consensus_5555#1      GTTATCGGATAAACGTCTGATTGTAAAATCCTGAAGAGAAATTGATAATTCGTATTAGGA 110
                      ********** **** ************* ******************************

consensus_5555#0      CAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTG 476
consensus_5555#2      CAACACCTTACGTTTTGAGTTCTATCCTACCGGGTTGGGTT------------------- 250
consensus_5555#1      CAACACCTTATGTTTTGAGTTCTATCCTACCGGGTTGGGTTAGCAATATCATGTCAAGTG 170
                      ********** ******************************                   

consensus_5555#0      CGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAG 536
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      CGCGGAAAGAAGGCAACCAACGGGAGGGCAACTCCGATAAAATGCGAAGGAAGACAGCAG 230
                                                                                  

consensus_5555#0      GAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACAC 596
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      GAGCTCAGTGACATGAAACGGAATATTAAAGAAAACGAACACACATACATACAAACACAC 290
                                                                                  

consensus_5555#0      TGAGCTGAAGAAATGGAGACAGCGGGATCAGACAAATCACACACAACACATTTTTTTGCA 656
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      TGAGCTGAAGAAATGGAGACAGCGGGATCAGATAAAACACACACAACACATTTTTTGCAT 350
                                                                                  

consensus_5555#0      TTCCTTTGGGTCTTTAGNTTGTAACTTCGATTGCTACTAATACTGGTCACGAAACACTCT 716
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      TCCTTTGGTTCTTTAGTTTGTAACTTCGATTGCTACTAATACTGTTCACGAAACACTCTA 410
                                                                                  

consensus_5555#0      AATCAGTAAGACCGATGTACGGGGGGTCNGCTGGAAAATGTAGCAAGAGAAAGAGAGAGA 776
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      ATCAGTAAGACCGATGTACGGGGGTTCGGCTGGAAAATGTAGCAAGAGAGAGAGAGAGAG 470
                                                                                  

consensus_5555#0      GACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAGA 836
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      AGACTCTTTGCAAAACACAGAAAAGTTCCCCCCGCATGAACACTTTTTAAACTGCAATAG 530
                                                                                  

consensus_5555#0      CGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAGCGAGCATTCAAAACAG 896
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      ACGTAAAGCTCTTGTGAGCAGCAAAATTCCACACCTAACACTAAACGAGCATTCAAAACA 590
                                                                                  

consensus_5555#0      AAGGCAGATTACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAGAACCGGG 956
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      GAAAGCAGAACTGGAAAATACACACATACACGCTCCACACGCAGAAAAGAAAGAACCGGG 650
                                                                                  

consensus_5555#0      TGTTGACAGCTTGCAAAGCAACTTGAAAGGACGGCGTAAGCAAATGTCTAATGAATGAAT 1016
consensus_5555#2      ------------------------------------------------------------
consensus_5555#1      TGTTGACAGCTTGCAAAGCAACTTGAAAAG------------------------------ 680
                                                                                  

consensus_5555#0      AGCGAAGATC 1026
consensus_5555#2      ----------
consensus_5555#1      ----------