cluster # 5562

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Anopheles gambiae
cluster # 5562 cluster # 5562 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5562#0 length = 666 sequences # 1

consensus_5562#1 length = 648 sequences # 3

consensusID : consensus_5562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTCCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCCATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTTTCATCGGGAGCG]

[+] EMBL BM629047             [CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTCCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCCATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTTTCATCGGGAGCG]




>consensus_5562#0
CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGA
ATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTCCCGACG
AAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCG
AACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAG
GCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCCATAGGA
ACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACG
AAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAA
GGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTA
GCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAA
CTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTA
CTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTTTCATCG
GGAGCG

consensusID : consensus_5562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 648
fasta sequence

                              [CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA-ATTTGGGCAAAGTAAAGCGTT-CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA-ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG-AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGACTGTAGGCGCCGAACATTCCCACTCTTCCATC]

[+] EMBL BM600809             [CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCGGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA ATTTGGGCAAAGTAAAGCGTT CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC                                                                ]
[+] EMBL BM582627             [                                                          ccGAACGAATTTATCTATCGAAATAGAGGAGTATTTGATA ATTTGGGCAAAGTAAAGCGTT CCCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAA ACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAG AAACAGGATGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGACAAGCGCGGTCATCGGACTGTAGGCGCCGAACATTCCCACTCTTCCATC]
[+] EMBL BX624378             [                                                                    TTATCCATCGGAATAGAGGAGTATTCGATANACTTGGGCAAAGTTACGCGTTNCCCGACGAAATCATCCCGAACTGTGCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTTCTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGATAACGCCATGGACTTTCTACGTAACTACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCACCCAANACGANGCACCGCCGACAAACAGCCGTCAGCCCGCGACCCAAAGGATAAGAAAACAGGATGCAAAGGAAAGCAAGGGCCAGCATACATCACGCAANNAGC                                                                                                                                                                                                           ]




>consensus_5562#1
CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCG
GAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTC
CCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTT
CTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAAC
TACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGGAACATACCGCT
TCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCCCAAACGAAGCACCGCC
GACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGATGCAAAGGAAAGCAAG
GGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAATCATTTAGCCTTTTTTA
AAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAACACAAACTCAAAAGAA
CCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCCGTACTACTACTACGAC
AAGCGCGGTCATCGGACTGTAGGCGCCGAACATTCCCACTCTTCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5562#0      ------CCGGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCG 54
consensus_5562#1      CCGAAAGAAGCCTGAAAAAGTTTCTGGGAAATTTTCTGACACCTTGTTTGTTTGTTTCCG 60
                               ***************************************************

consensus_5562#0      GAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTC 114
consensus_5562#1      GAACGAATTTATCTATCGAAATAGAGGAGTATTTGATAATTTGGGCAAAGTAAAGCGTTC 120
                      ************************************************************

consensus_5562#0      CCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTT 174
consensus_5562#1      CCGACGAAATCATCCCTAACTGTTCCGTGCAGTGAGCTGTGTGGCAAGGATATCGATCTT 180
                      ************************************************************

consensus_5562#0      CTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAAC 234
consensus_5562#1      CTCCCGAACGGACCCCCATCGTCCGTAGGCTTCGAGAACGCCATGGACTTTCTACGTAAC 240
                      ************************************************************

consensus_5562#0      TACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGGTTGCCCCTTCCC 294
consensus_5562#1      TACGAGGCCGCGGACCAGGATGAATCGGAGGATATGGACTCGAATCGG------------ 288
                      ************************************************            

consensus_5562#0      ATAGGAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCC 354
consensus_5562#1      ----GAACATACCGCTTCACCGACCGGTTCGTCGAGCTCGTCCGCATCGGCGGGATCGCC 344
                          ********************************************************

consensus_5562#0      CAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGA 414
consensus_5562#1      CAAACGAAGCACCGCCGACAAACAGCCGTCATCCCGCGACCAAAAGGATAAGAAACAGGA 404
                      ************************************************************

consensus_5562#0      TGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAAT 474
consensus_5562#1      TGCAAAGGAAAGCAAGGGCCAGCATAAATCACGCAAGGAGCGGGACGAGAACACCTCAAT 464
                      ************************************************************

consensus_5562#0      CATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAA 534
consensus_5562#1      CATTTAGCCTTTTTTAAAAAAATGCATATGCCACAAAATCCCTCAAAACACACACACAAA 524
                      ************************************************************

consensus_5562#0      CACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC 594
consensus_5562#1      CACAAACTCAAAAGAACCTCCCAAGTGCAACGAACCTGCTGGATTCATGTCACCAGCCCC 584
                      ************************************************************

consensus_5562#0      GTACTACTACTACGACAAGCGCGGTCATCGGGACTGTAGGCGCCGAACATTCCCACTCTT 654
consensus_5562#1      GTACTACTACTACGACAAGCGCGGTCATCGG-ACTGTAGGCGCCGAACATTCCCACTCTT 643
                      ******************************* ****************************

consensus_5562#0      TCATCGGGAGCG 666
consensus_5562#1      CCATC------- 648
                       ****