|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence
[AATAATAATAATTATAATAATA-ATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAG]
[+] EMBL BX610619 [AATAATAATAATTATAATAATA ATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAG]
[+] EMBL BX610620 [AATAATAATAATTATAATAATATATATAAAACAGAGCATTACTGGAGACAGGTACACAGCAAGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATTTGTAAACAAAGCAAAAGAAGAAACACAAAATATATTTTCCGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATA ]
consensusID : consensus_5564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCTGACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATATTGTTTACA]
[+] EMBL BX615806 [TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTGGAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACCTCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTGTACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTCTGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAGACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCTGACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATATTGTTTACA]
consensusID : consensus_5564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence
[TCAGGAATACGTTCGCCAAGATCGGAAGCTAACCTCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCGTACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC]
[+] EMBL BX616761 [TCAGGAATACGTTCGCCAAGATCGGAAGCTAACCTCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCGTACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5564#1 ------------------------------------------------------------
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 AATAATAATAATTATAATAATAATATAAAACAGAGCATTACTGGAGACAGGTACACAGCA 60
consensus_5564#1 ------------------------------------------------------------
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 AGAACAGCAACAACAACAACAAAAACAACAACAAAAACGAAACAAAACTTCAAGCATATT 120
consensus_5564#1 ---------------TATACATTCGCGATGTTTTCCGCTTTTACGAACCTTCCTCCGTTG 45
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 TGTAAACAAAGCAAAAGAAGAAACACAAAATATA----TTTTCCGAACCTTCCTCCGTTG 176
consensus_5564#1 GAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACC 105
consensus_5564#2 --------------------------TCAGGAATACGTTCGCCAAGATCGGAAGCTAACC 34
consensus_5564#0 GAGCGCTGGTTGTTTTTCTCTATCGGTCAGGAATACGTTCGTCAAGATCGGAAGCTAACC 236
*************** ******************
consensus_5564#1 TCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTG 165
consensus_5564#2 TCCGACTGGTATGTTCCCGCCGACTCGGGGTGTCAAGATCGGAAGCTAACCCCCGACTCG 94
consensus_5564#0 TCCGACTTGTATGTTCCTGCCGACTCTGGGTTTCAAGATCGGAAGTTAACCTCCGACTTG 296
******* ********* ******** **** ************* ***** ****** *
consensus_5564#1 TACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTC 225
consensus_5564#2 TACGGCGCGAGGTCTCTACGAGTCCTCTCTGGAGCCACCATATACTTTCCGCAC------ 148
consensus_5564#0 TACGTTGCGAGGTCTCTACTAGTCCTCTCTGGAGCCACCATATATTTTCCGCACCGAGTC 356
**** ************* ************************ *********
consensus_5564#1 TGAACTCGTTGGGAAGCGCCAAGACAGGAGGACTTTACCGTCCGACTTGGCTTGGAACAG 285
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 TGAACTCGTTGGGAAGCGCCAAGACAGGAGGATTTTACCGTCCGACTTGGCTTGGAACAG 416
consensus_5564#1 ACAAACAACTTAGTCTTTGAGTTCTTGTGCTTGAAAGTCGATTTATTCATGCTTATTCCT 345
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 ACAAACAACTTAGTCTTTGAG--------------------------------------- 437
consensus_5564#1 GACTTATATACTAATTTTCTGCTGATCGATCGCGATCAGCAGTTTTTATTTGGTCGATAT 405
consensus_5564#2 ------------------------------------------------------------
consensus_5564#0 ------------------------------------------------------------
consensus_5564#1 TGTTTACA 413
consensus_5564#2 --------
consensus_5564#0 --------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||