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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATAGAAATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGCGGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTGCATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCTTTCTTCCTGTTTCTTTCCGCGATATGCGTCACATTAATATGCATTGCAATAAGGAAGCGTGCGCACGGCACCATACAATTGGACCGTAACAGTTTGATGCGGTTTTAATTTAATATTGCTTTTGTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAACACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAAAGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGAT]
[+] EMBL BM582943 [CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATAGAAATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGCGGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTGCATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCTTTCTTCCTGTTTCTTTCCGCGATATGCGTCACATTAATATGCATTGCAATAAGGAAGCGTGCGCACGGCACCATACAATTGGACCGTAACAGTTTGATGCGGTTTTAATTTAATATTGCTTTTGTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAACACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAAAGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGAT]
consensusID : consensus_5567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAATATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGCTACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGCAACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAGTCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTCGTGTTCGGGATGGCGTACTACATTCAAAACCGGGACCGCTTTATCGTGGAGGTAGCCGATTTCAATTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCCGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTCCAC]
[+] EMBL BM590837 [CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAATATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGCTACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGCAACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAGTCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTCGTGTTCGGGATGGCGTACTACATTCAAAACCGGGACCGCTTTATCGTGGAGGTAGCCGATTTCAATTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCCGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTCCAC]
consensusID : consensus_5567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGCTTTATCGTAGAGGTGGCCGATTTCAACTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCGGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCACCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAATTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAAACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAGTCCAGTGAGTCTAGTAGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGT]
[+] EMBL BM643187 [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTTATCGTAGAGGTGGCCGATTTCAACTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCGGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCACCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAATTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAAACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAGTCCAGTGAGTCTAGTAGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGT]
consensusID : consensus_5567#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CCGGTTGGCGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGATATTGATGCATCTACGGTTTATTTTACACAGTTATATTTTAAGTCGGTACCAACGTATGAATCGCCAGGCAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACTGCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCGTACAAAATTTTGAATATTACACAATTAGGTTTGGTTGCGCGCGGGCTCGAATATGTGGTTGGAAGTTGTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAGCAGGTCAAATGCAGATAGCGAAATGAACCGCCAAGACGCAAAACAATGCAACGCAAATCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAAAAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACCGTGGCACATTGCACCTAGAG]
[+] EMBL BM601723 [CCGGTTGGCGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGATATTGATGCATCTACGGTTTATTTTACACAGTTATATTTTAAGTCGGTACCAACGTATGAATCGCCAGGCAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACTGCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCGTACAAAATTTTGAATATTACACAATTAGGTTTGGTTGCGCGCGGGCTCGAATATGTGGTTGGAAGTTGTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAGCAGGTCAAATGCAGATAGCGAAATGAACCGCCAAGACGCAAAACAATGCAACGCAAATCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAAAAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACCGTGGCACATTGCACCTAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5567#1 CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAAT 60
consensus_5567#2 ------------------------------------------------------------
consensus_5567#0 ------------------------------------------------------------
consensus_5567#3 ------------------------------------------------------------
consensus_5567#1 ATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGC 120
consensus_5567#2 ------------------------------------------------------------
consensus_5567#0 ------------------------------------------------------------
consensus_5567#3 ------------------------------------------------------------
consensus_5567#1 TACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGC 180
consensus_5567#2 ------------------------------------------------------------
consensus_5567#0 ------------------------------------------------------------
consensus_5567#3 ------------------------------------------------------------
consensus_5567#1 AACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAG 240
consensus_5567#2 ------------------------------------------------------------
consensus_5567#0 ------------------------------------------------------------
consensus_5567#3 ------------------------------------------------------------
consensus_5567#1 TCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTC 300
consensus_5567#2 ------------------------------------------------------------
consensus_5567#0 ------------------------------------------------------------
consensus_5567#3 ------------------------------------------------------------
consensus_5567#1 GTGTTCGGGATGGCGTAC-TACATT-CAAAACCGGGACCGCTTTATCGTGGAGGTAGCCG 358
consensus_5567#2 ----------CCGCGGACGCGTGGG-CGGACGCGTGGG-GCTTTATCGTAGAGGTGGCCG 48
consensus_5567#0 ----------CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTA 50
consensus_5567#3 -----------------CCGGTTGG-CGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAG 42
* * **
consensus_5567#1 AT--TTCAATTTTGGCGACACGAGCTCGCTGGATGACGAC-ATGGAGTACAAAACGTTCC 415
consensus_5567#2 AT--TTCAACTTTGGCGACACGAGCTCGCTGGATGACGAC-ATGGAGTACAAAACGTTCC 105
consensus_5567#0 ATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATA 110
consensus_5567#3 AG----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACT 98
* ** * * * * * * *
consensus_5567#1 AC---CAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCC 472
consensus_5567#2 AC---CAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCC 162
consensus_5567#0 GA---AATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGC 167
consensus_5567#3 AATCGAACAAAACAAGTAATAACGTCGTAAA--AAGATTAAATATTGTGATATTGA-TGC 155
* * * * * * * * * * * *
consensus_5567#1 GGCGCTCGAGCGC-CCACGACGTGGATGAC-ATTTCACCATCGTCCGG--TGCC-GCCGG 527
consensus_5567#2 GGCGCTCGAGCGC-CCACGACGTGGATGAC-ATTTCACCATCGTCCGG--TGCG-GCCGG 217
consensus_5567#0 GGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTG 227
consensus_5567#3 ATCTACGGTTTATTTTACACAGT-TATATT--TTAAGTCGGTACCAACG-TATGAATCGC 211
* * * * * ** * * *
consensus_5567#1 TGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAAC----AGCG 583
consensus_5567#2 TGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAAC----AGCG 273
consensus_5567#0 CATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCT 287
consensus_5567#3 CAGG---CAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACT 268
* * * ** * ** * *
consensus_5567#1 TCAGGTAGGTTTTTGTTCGGCGGTT-GCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCC 642
consensus_5567#2 TCAGGTAGGTTTTTGTTCGGCGGTT-GCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCC 332
consensus_5567#0 TTCTTCCTGTTTCTTTCCGCGATAT-GCGTCACATTAATATGCATTGCAATAAGGAAGCG 346
consensus_5567#3 GCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCG-TACAAAATTT 327
* * * * ** * *
consensus_5567#1 TCTCCTTCTCCAC----------------------------------------------- 655
consensus_5567#2 TCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCA 392
consensus_5567#0 TG-CGCACGGCACCATACA--ATTGGACCGTAACAGTTTGATG--CGGTTTTAATTTAAT 401
consensus_5567#3 TG------AATATTACACA--ATTAGGTT----TGGTTGCGCGC-GGGCTCGAATATGTG 374
* *
consensus_5567#1 ------------------------------------------------------------
consensus_5567#2 CCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAA 452
consensus_5567#0 ATTGCTTTT----GTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAA 457
consensus_5567#3 GTTGGAAGTT--GTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAG 432
consensus_5567#1 ------------------------------------------------------------
consensus_5567#2 TTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAA 512
consensus_5567#0 CACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAA 517
consensus_5567#3 CAGGTCAAATGC--AGATAGCGAAATGAACCGCCAAGACGCAAAACAA-TGCAACGCAAA 489
consensus_5567#1 ------------------------------------------------------------
consensus_5567#2 ACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAG-TCCAGTGAGTCTAG-TAGTG 570
consensus_5567#0 AGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAGAGAGA-GAGAG 575
consensus_5567#3 TCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAA 549
consensus_5567#1 ------------------------------------------------------------
consensus_5567#2 A-AGCCGTTGAACCGCTATGAATTGGATT-GTTAATGTTTTAGTAAGCAGAAAAAAAGAT 628
consensus_5567#0 AGAGAGAGAGAGATAGAGGCAAAGGAAAT-GTAAGCTTACTAATCGAACAAAACAAGTAA 634
consensus_5567#3 AAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACC-GTGG 608
consensus_5567#1 ------------------------------
consensus_5567#2 TACCATATAATGCTGATATAATAGT----- 653
consensus_5567#0 TAACGTCGTAAAAAGATTAAATATTGTGAT 664
consensus_5567#3 CA-CATTGCACCTAGAG------------- 624
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||