cluster # 5568

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5568 cluster # 5568 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5568#0 length = 703 sequences # 3

consensus_5568#1 length = 649 sequences # 1

consensusID : consensus_5568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 703
fasta sequence

                              [AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC-TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTGTGTCCAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG]

[+] EMBL BX627208             [AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATATTAACCACAGGGTC    ACGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCCTTTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTTAGCAGCCAACGTTTGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTGTGTCC                                                                                                   ]
[+] EMBL BM582962             [                  ATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCCCTTTTCCCTTTTTTCAACTAATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATCTAAATTGTATGACTAATAGAGTGACGCAAAGT  GTGATTCAAACGCGCGCGCAAAGCAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG]
[+] EMBL BM582965             [                  ATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAAGGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCC TTTTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGTCATAATTAAGCAGCCAACGGATGAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_5568#0
AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAA
GGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCCTT
TTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGT
CATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACT
AATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATC
TAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAA
AAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTA
TATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAA
CAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACAT
CACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTGT
GTCCAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTG
GGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG

consensusID : consensus_5568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CGGACAGAATTGCGAACAGCGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTATTTTGAAACTCGTGTTCTCCGTGTACAGCAAAGCAAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAACCGGGAAGAGTAGAGACCACCGCTCCTCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAACAGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAATAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTATTTTACCCACTAACCGTACACAG]

[+] EMBL BX624672             [CGGACAGAATTGCGAACAGCGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTATTTTGAAACTCGTGTTCTCCGTGTACAGCAAAGCAAAAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAACCGGGAAGAGTAGAGACCACCGCTCCTCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAACAGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAATAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTATTTTACCCACTAACCGTACACAG]




>consensus_5568#1
CGGACAGAATTGCGAACAGCGAGCGAGCGAGCGAGCGAGCGAGCGTGTGTATTTTGAAAC
TCGTGTTCTCCGTGTACAGCAAAGCAAAAAAACATCAAACGGCACACGACTGATTTGACA
CGAGCAAACGAAATCAAATTTGAATGTATATCAGTATTTTAAAGCGCGTCTAATACTATG
GTGTTCGGCAAAACGAGGGAGCAAACAACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGAT
AGATGTTTAGACATATTTTCAACTACATCACAAATTGTTCGTCAAAAATTTATAGTTTTT
CTAATGAAAATTAAAACCATTTAAGTTTGTCGAATAGAAGAGGCAATGCTGGTGATGGCG
AGGTGCGGTTGTGGTGGATATGATTTTGGGTTTATTTAGCAAAAACGGTTATGCAGCAAA
CCGGGAAGAGTAGAGACCACCGCTCCTCCAGCAACACTTAAAATTGTCACACTGTCACAC
TATTACAATCGTTTTTAGTGGTAAACAGGCGAATAGTATGACCCCCGGACCCGTTGAAGG
TCGTGCATAGTANGGTATAGCCGGAATAGAGGTAGTTAGTTGTATTATTGTACATTGGTT
ATTANGCTCCTCTGGTCGATTCGTTATTTTACCCACTAACCGTACACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5568#0      AAAAAGAAAATAAAACAAATACAAAACAAAATTGAAACATAGTAATCAGAGGGTCGGAAA 60
consensus_5568#1      ------------------------------------------------------------
                                                                                  

consensus_5568#0      GGGAAGAAAGGCACTGCTAAAGGTAGTAGAGACACGTATAAATAATGCCAATCGTGCCTT 120
consensus_5568#1      ------------------------------------------------------------
                                                                                  

consensus_5568#0      TTTTTATAATACATACACCCACATTCTTACCAGATGGCGAAACCACGAAAAAAGAGCAGT 180
consensus_5568#1      ------------------------------------------------------------
                                                                                  

consensus_5568#0      CATAATTAAGCAGCCAACGGATGAATGTTAAAAGCCTTGCTCTTTTCCCTTTTTTCAACT 240
consensus_5568#1      ------------------------------------------------------------
                                                                                  

consensus_5568#0      AATAATTTTTCGCAAACAATTGGCATATTAAATTGATTTTTAGAGTATCAAAATAAAATC 300
consensus_5568#1      ----------------------------CGGACAGAATTGC-GAACAGCGAGCGAGCGAG 31
                                                     *  ** **   **  * * *   *     

consensus_5568#0      TAAATTGTATGACTAATAGAGTGACGCAAAGTGAGTGATTAAAACGCGCGCGCAAAGCAA 360
consensus_5568#1      CGAGC-GAGCGAGCGT--GTGTATTTTGAAACTCGTGTTCTCCGTGTACA-GCAAAGCAA 87
                        *   *   **      * **      **    *** *      *  *  *********

consensus_5568#0      AAAA-CATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGT 419
consensus_5568#1      AAAAACATCAAACGGCACACGACTGATTTGACACGAGCAAACGAAATCAAATTTGAATGT 147
                      **** *******************************************************

consensus_5568#0      ATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACA 479
consensus_5568#1      ATATCAGTATTTTAAAGCGCGTCTAATACTATGGTGTTCGGCAAAACGAGGGAGCAAACA 207
                      ************************************************************

consensus_5568#0      ACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATATTTAGACGTATTTTCAACTACA 539
consensus_5568#1      ACAGGGAAGAAAGTGTAAGGAAAGAAAGGAGATAGATGTTTAGACATATTTTCAACTACA 267
                      ************************************* ******* **************

consensus_5568#0      TCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAACCCATTTAAGTG 599
consensus_5568#1      TCACAAATTGTTCGTCAAAAATTTATAGTTTTTCTAATGAAAATTAAAACCATTTAAGTT 327
                      ************************************************ ********** 

consensus_5568#0      TGTCCAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTT 659
consensus_5568#1      TGTCGAATAGAAGAGGCAATGCTGGTGATGGCGAGGTGCGGTTGTGGTGGATATGATTTT 387
                      **** *******************************************************

consensus_5568#0      GGGTTTATTTAGCAAAAACGGTTATGCAGCAAAACCGGGAAGAG---------------- 703
consensus_5568#1      GGGTTTATTTAGCAAAAACGGTTATGCAGCAAA-CCGGGAAGAGTAGAGACCACCGCTCC 446
                      ********************************* **********                

consensus_5568#0      ------------------------------------------------------------
consensus_5568#1      TCCAGCAACACTTAAAATTGTCACACTGTCACACTATTACAATCGTTTTTAGTGGTAAAC 506
                                                                                  

consensus_5568#0      ------------------------------------------------------------
consensus_5568#1      AGGCGAATAGTATGACCCCCGGACCCGTTGAAGGTCGTGCATAGTANGGTATAGCCGGAA 566
                                                                                  

consensus_5568#0      ------------------------------------------------------------
consensus_5568#1      TAGAGGTAGTTAGTTGTATTATTGTACATTGGTTATTANGCTCCTCTGGTCGATTCGTTA 626
                                                                                  

consensus_5568#0      -----------------------
consensus_5568#1      TTTTACCCACTAACCGTACACAG 649