cluster # 5575

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Anopheles gambiae
cluster # 5575 cluster # 5575 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5575#0 length = 676 sequences # 3

consensus_5575#1 length = 560 sequences # 1

consensusID : consensus_5575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 676
fasta sequence

                              [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT-GCGCATCA-CCGTGACCGACTTCATCATTCA--CCCGCAGTACG-AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC]

[+] EMBL BX619139             [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGGCGCATCACCCGTGACCGACTTCATCATTCACCCCCGCAGTACGAANGCGGAGC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX628044             [                           GTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA  CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC]
[+] EMBL BX628452             [                                         TGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA  CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGT                                                               ]




>consensus_5575#0
AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTA
CGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCC
CTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC
GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC
CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT
CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT
TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT
GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG
GGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGT
CATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGT
GTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGAT
CGTGGACGCGGACGGC

consensusID : consensus_5575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC]

[+] EMBL BX468684             [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC]




>consensus_5575#1
AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTG
TCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCC
GTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTG
ACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTG
GTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAAC
CTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGC
TTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCT
CGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGC
ACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGT
GGACGCGGACGGCATCAGNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5575#0      AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTA 60
consensus_5575#1      ------------------------------------------------------------
                                                                                  

consensus_5575#0      CGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCC 120
consensus_5575#1      ------------------------------------------------------------
                                                                                  

consensus_5575#0      CTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 180
consensus_5575#1      -----AGATCGGCACGA--GGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 53
                              * **   **     **************************************

consensus_5575#0      GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 240
consensus_5575#1      GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 113
                      ************************************************************

consensus_5575#0      CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 300
consensus_5575#1      CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 173
                      ************************************************************

consensus_5575#0      CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 360
consensus_5575#1      CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 233
                      ************************************************************

consensus_5575#0      TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 420
consensus_5575#1      TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 293
                      ************************************************************

consensus_5575#0      GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 480
consensus_5575#1      GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 353
                      ************************************************************

consensus_5575#0      GGGCCGCTTTGGCGAGGGTAC-GGCCAACTCGGAGGTGCTGCGTTTCGG-TCGCTCCCAG 538
consensus_5575#1      GGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAG 413
                      ********************* *************************** **********

consensus_5575#0      GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCA-GCA 597
consensus_5575#1      GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCA 473
                      ************************************* *****************  ***

consensus_5575#0      CGTGTGCACGGACGGTGCGAACAGCTCGCCGT-GCCANGGCGATGTCGGCGCTCCGCTGA 656
consensus_5575#1      CGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGA 533
                      ******************************** **** **********************

consensus_5575#0      CGATCGTGGACGCGGACGGC------- 676
consensus_5575#1      CGATCGTGGACGCGGACGGCATCAGNC 560
                      ********************