cluster # 5590

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Anopheles gambiae
cluster # 5590 cluster # 5590 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5590#0 length = 682 sequences # 3

consensus_5590#1 length = 361 sequences # 1

consensusID : consensus_5590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 682
fasta sequence

                              [CCGACGGAAAAGAAACCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACAACGA--A-AAGAACATATCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATTAACGGAGCGGTGATACAATCCGTT]

[+] EMBL BM584446             [CCGACGGAAAAGAAACATCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACGACGA  A AAGAACATAT                                                                ]
[+] EMBL BM598382             [               CCGCGCAAGTGCGCTGTGTTGATGTGGGAAATAAAAGTACACAATTGTTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATAGCATCGCCGTCATCATCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCATCGTCGT     T CGTTCCAGCGCAGATCTCATCACAAATATCGGGACCGACAGTCCCATCTTCAATGCAATCGGACACTGCTCCATATTACAATCCGTTGCCCTCGTATGATTGCAATAACAATACAACGA  A AAGAACATACCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATTAACGGAGCGGTGATACAATCCGTT]
[+] EMBL BM588389             [               CCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAATTGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCGATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTGGCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTTATATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTCGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATGGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAATACAACGACGAGAAGAACATATCACCAAATGCAGG                                                   ]




>consensus_5590#0
CCGACGGAAAAGAAACCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAAT
TGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCG
ATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTG
GCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCA
TATCCGTACCTCTTCGGGGCCAATTCCTTGGACTGGAACAATACCTTCCCGCTATCCGTC
GTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCATG
GAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAATACCATCGCCG
TCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGTCG
TCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTTCA
ATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACAAT
ACAACGAAAAGAACATATCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATTAA
CGGAGCGGTGATACAATCCGTT

consensusID : consensus_5590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [GATCGCACGAGGTGTAAAAGTGAACCGGCCTTGCAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGCCGTCATCATCACG]

[+] EMBL BX469129             [GATCGCACGAGGTGTAAAAGTGAACCGGCCTTGCAATACTGTTCACCGATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGCCGTCATCATCACG]




>consensus_5590#1
GATCGCACGAGGTGTAAAAGTGAACCGGCCTTGCAATACTGTTCACCGATGGACACGTAC
GGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCGGCACCATCCAAC
TACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCATATCCGTACCTC
TTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGTCGTCTACCCCGG
TGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCACAGAACAACCGCA
GGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGCCGTCATCATCAC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5590#0      CCGACGGAAAAGAAACCGCGTTAGCGCGCTGTATTGATGTGGGAAATAAAAGTACACAAT 60
consensus_5590#1      ------------------------------------------------------------
                                                                                  

consensus_5590#0      TGCTTAGTGCATCTGAAATTACTGCAAAGTGAACCCGGCCTTGGCAAATACTGTTCACCG 120
consensus_5590#1      ---------GATCGCACGAGGTGTAAAAGTGAACC-GGCCTTGC--AATACTGTTCACCG 48
                                ***  *         ********** *******   **************

consensus_5590#0      ATGGTCACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTTG 180
consensus_5590#1      ATGGACACGTACGGGAAGGATTATCAATGGATCGTTCATACGCCGCACGTCGAACCGTCG 108
                      **** ***************************************************** *

consensus_5590#0      GCACCATCCAGCTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCA 240
consensus_5590#1      GCACCATCCAACTACTGGAAGGGAGCGGAAACTGCAGCTGTAGCGCCTGGTTACAGCTCA 168
                      ********** *************************************************

consensus_5590#0      TATCCGTACCTCTTCGGGGCCAA-TTCCTTGGACTGGAACAATACCTTCCCGCTATCCGT 299
consensus_5590#1      TATCCGTACCTCTTCGGGGCCAAGTTCCTTGGACTGGAACAATGCCTTCCCGTTCTCCGT 228
                      *********************** ******************* ******** * *****

consensus_5590#0      CGTTTACCCCGGCGGAGCTTCCCCTTACCAGGGCAACGGGCTGTGGAATGAGTCGGGCAT 359
consensus_5590#1      CGTCTACCCCGGTGGAGCTTCACCTTTCCAGGGCAACGGGCTGTGGAATGAGACGGGCAC 288
                      *** ******** ******** **** ************************* ****** 

consensus_5590#0      GGAACAACCGCAAGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAA-TACCATCGC 418
consensus_5590#1      AGAACAACCGCAGGAACAGCCGTACCGACCGTTCGGGTTCTACATGCCAAGTAGCATCGC 348
                       *********** ************************************* ** ******

consensus_5590#0      CGTCATCGTCACTATCATCACCCACATCATCGACGTCGTCATCGTTGTCGTCGTCGTCGT 478
consensus_5590#1      CGTCATCATCACG----------------------------------------------- 361
                      ******* ****                                                

consensus_5590#0      CGTCGTCGTCCGTTCCAGCGCAGATCTCATCACAAATATCGGCACCGTCGGTCCCATCTT 538
consensus_5590#1      ------------------------------------------------------------
                                                                                  

consensus_5590#0      CAATGCAATCGAACGCTGCTCCATATTACAATCCGTTCCCCTCGTATGATTGCAATAACA 598
consensus_5590#1      ------------------------------------------------------------
                                                                                  

consensus_5590#0      ATACAACGAAAAGAACATATCACCAAATGCAGGACGAGCCGTTGCATGCAGCCGCCTATT 658
consensus_5590#1      ------------------------------------------------------------
                                                                                  

consensus_5590#0      AACGGAGCGGTGATACAATCCGTT 682
consensus_5590#1      ------------------------