cluster # 5592

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Anopheles gambiae
cluster # 5592 cluster # 5592 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5592#0 length = 585 sequences # 3

consensus_5592#1 length = 253 sequences # 1

consensusID : consensus_5592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 585
fasta sequence

                              [CCGCGAGCCCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT-GTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC]

[+] EMBL BM584477             [CCGCGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT Gg                                                                                        ]
[+] EMBL BM596425             [        CCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCACTTTATGGCT GTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC]
[+] EMBL BM589687             [        CCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGCTTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACCGGCCCCTTTATGGCTGGTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGA                  ]




>consensus_5592#0
CCGCGAGCCCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCCAGC
TTTCCCACAGGGGAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGT
TCTTTTTTGGTGTCCGTAGTTTTATTTAATTGTGTGATTTTTGTCTAGTGAAAGAAGCGG
AATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTAATAAGCTGAAC
GCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTCGAGTGGCTTTG
ATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAAAGGGGCGACAA
TAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTAGACCACCGGAA
CACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTATCCTTCGGACC
GGCCACTTTATGGCTGTTTGTTTGTGCCGCGCTTGATGCGGCACTGATGACCAACGCTCA
GTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC

consensusID : consensus_5592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [CCGGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCCAGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGTGAAAGAAGCGGAATTAAACTGTGCGATTGTGTGAGCAAAGGACTAAAAAAAAACTAATAAGCTGAACGCTGAAT]

[+] EMBL BM592660             [CCGGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCCAGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGCAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGTGAAAGAAGCGGAATTAAACTGTGCGATTGTGTGAGCAAAGGACTAAAAAAAAACTAATAAGCTGAACGCTGAAT]




>consensus_5592#1
CCGGAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCCA
GCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAGC
AGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGTG
AAAGAAGCGGAATTAAACTGTGCGATTGTGTGAGCAAAGGACTAAAAAAAAACTAATAAG
CTGAACGCTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5592#0      CCGCGAGCCCGCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCC---C 57
consensus_5592#1      CCG-GAGCATCCGTGGTTCGGGGCCACCTTCCGGACAGTTAATTGTGTCTGCTGCCAGCC 59
                      *** ****   *********************************************   *

consensus_5592#0      AGCTTTCCCACAGGGGA-GCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAG 116
consensus_5592#1      AGCTTTCCCACAGGGGAAGCAGGGAAACTTTGCGAGCTGGAAGACGTTTTGGCATTCCAG 119
                      ***************** ******************************************

consensus_5592#0      CAGTTCTTTTTTGGTGTCCGTA--GTTTTATTTAATTGTGTGATTTTT---GTCT--AGT 169
consensus_5592#1      CAGTTCTTTTTTGGTGTCCGTAAAGTTTTATTTAATTGTGTGAATTTTTTGGTCCTAAGT 179
                      **********************  ******************* ****   ***   ***

consensus_5592#0      GAAAGAAGCGGAATTAAAACTGTGCGAATTGTGTGAGCAAAAGGACTAAAAAAGAAGCTA 229
consensus_5592#1      GAAAGAAGCGGAATTAAA-CTGTGCGA-TTGTGTGAGCAAA-GGACTAAAAAA-AAACTA 235
                      ****************** ******** ************* *********** ** ***

consensus_5592#0      ATAAGCTGAACGCTGAATGATCAGCGCTTTTATGCTGTTTCCCGCCCGGCAACTCGGTTC 289
consensus_5592#1      ATAAGCTGAACGCTGAAT------------------------------------------ 253
                      ******************                                          

consensus_5592#0      GAGTGGCTTTGATGAATACAGCAAAAATTAATAACAAACGGAAGGAAAGAAGCAACAAAA 349
consensus_5592#1      ------------------------------------------------------------
                                                                                  

consensus_5592#0      AGGGGCGACAATAAAAAAAACAATCCACCCGAGTGGAAGAATTGGACAGCAAAGGGACTA 409
consensus_5592#1      ------------------------------------------------------------
                                                                                  

consensus_5592#0      GACCACCGGAACACCGCTGTAAAGCAGCGGGAGCGGATAAGCAAAATGAAATTAAAATTA 469
consensus_5592#1      ------------------------------------------------------------
                                                                                  

consensus_5592#0      TCCTTCGGACCGGCCACTTTATGGCTGTTTGTTTGTGCCGCGCTTGATGCGGCACTGATG 529
consensus_5592#1      ------------------------------------------------------------
                                                                                  

consensus_5592#0      ACCAACGCTCAGTATGCAGGGTGTGACTACACGATCGATGTCGCTAGCGGGCAGTC 585
consensus_5592#1      --------------------------------------------------------