cluster # 5596

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Anopheles gambiae
cluster # 5596 cluster # 5596 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5596#0 length = 954 sequences # 3

consensus_5596#1 length = 519 sequences # 1

consensusID : consensus_5596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 954
fasta sequence

                              [CCG-ACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGACAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGACCGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG]

[+] EMBL BM608838             [CCG ACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCG                                                                                                                                                                                                                                                    ]
[+] EMBL BM645489             [CCGCACGGAACACTATTCCGGTACACGGTCTCGTGCGCCTACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM584990             [                                                                                                                                                                                                                                                                                                    ccgGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTCCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTG AAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGACAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGACCGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG]




>consensus_5596#0
CCGACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATC
GTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTT
CGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGT
GGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTT
CAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTT
CGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGG
CTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCG
TCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGG
GCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCC
ACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC
ATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGC
TGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCGCGCCAAGCGC
ACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGAC
CGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGA
CAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGAC
CGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG

consensusID : consensus_5596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CGACCCACGCGTCCGCGTCACAAGATGATGTCGTATCTCGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG]

[+] EMBL BM629643             [CGACCCACGCGTCCGCGTCACAAGATGATGTCGTATCTCGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG]




>consensus_5596#1
CGACCCACGCGTCCGCGTCACAAGATGATGTCGTATCTCGCATCCAAGGTTACGGCGGCT
ACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTC
GTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGC
AAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCAC
TACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCAT
GGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTG
CCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAAGTGCGCGCCAAGCGCACC
GAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGACCGC
ACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5596#0      CCGACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATC 60
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      GTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTT 120
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      CGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGT 180
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      GGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTT 240
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      CAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTT 300
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      CGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGG 360
consensus_5596#1      CGACCCACGCG-TCCGCGTCACAAGATGATGTCGTATCTC-GCATCCAAGGTTACGGCGG 58
                      ** *  * *** * ***    * *    **  *    *   *******************

consensus_5596#0      CTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCG 420
consensus_5596#1      CTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCG 118
                      ************************************************************

consensus_5596#0      TCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGG 480
consensus_5596#1      TCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGG 178
                      ************************* **********************************

consensus_5596#0      GCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCC 540
consensus_5596#1      GCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCC 238
                      ************************************************************

consensus_5596#0      ACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC 600
consensus_5596#1      ACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC 298
                      ************************************************************

consensus_5596#0      ATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGC 660
consensus_5596#1      ATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGC 358
                      ************************************************************

consensus_5596#0      TGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCGCGCCAAGCGC 720
consensus_5596#1      TGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAA-GTGCGCGCCAAGCGC 417
                      ************************************* ****** ***************

consensus_5596#0      ACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGAC 780
consensus_5596#1      ACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGAC 477
                      ***************************** ******************************

consensus_5596#0      CGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGA 840
consensus_5596#1      CGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG------------------ 519
                      *********************** ** **************                   

consensus_5596#0      CAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGAC 900
consensus_5596#1      ------------------------------------------------------------
                                                                                  

consensus_5596#0      CGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG 954
consensus_5596#1      ------------------------------------------------------