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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_56#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT]
[+] EMBL BX623417 [GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAAATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATGCCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGGCACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTTTACATTCAAAGAACAGCGAAACCGTTACGCTTCCAGTTGCGCGATATTCCACGCTGACACGCACGCTGAACGAGCAGCGGAAGAGGGGTGAGAGGAGTGGTGAAGAAAGAAGCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAATAGAATCGTGTAAGTGTGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGATCCTGCCAGCGCATTTTTGGAGGATGAGCAACTCCGTTCACCGGCCTGGGGCCATTCTTGCTTAATAAAAAAAAATGTGTGGTCGCTCGTTTGTTTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGAGAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAATTGTTACTAGTTGNGGNACT]
consensusID : consensus_56#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG]
[+] EMBL BM580678 [AGCAACCAAAACAAATATGTAAAACAAAAGTGTACGAAACATTTTGGCCCTTTTGTGTGTATGTGTGTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAGTTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCTTGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCGTGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCCACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAGCGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAAGCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAAAAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGGTTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTCTCTCTCTCTCTCTCTCTCTGCTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAAAGAGATAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_56#0 GTGTGTATGTTTTCTAGATTGTATTATTTTTGCCTGCAAACTGGGGAAATTTCAACAAAA 60
consensus_56#1 --------AGCAACCAAAACAAAT-ATGTAAAACAAAAGTGTACGAAACATTTTGGCCCT 51
* * * ** ** * * * * * ** **
consensus_56#0 ATTGCCTCGATTAGCCGCGTACTTTCTCCTACATCTAAGCCTGACCCCGTTCTCGGTATG 120
consensus_56#1 TTTGTGTGTATGTGT-GTGTGTGTTTGTGCATGTGTGAGTGTGTGTGTTTATCAGACCAG 110
*** * ** * * ** ** * * * ** ** * * *
consensus_56#0 CCTTTTTTTCCAATCCCTTGAAAATGTCGGAAGGAAGAAATGATGACAGGGTACGCGGGG 180
consensus_56#1 TTGCCTTTTGACAGATTGCCCGCACACCAATACACACAGCCAGTGGTGGTTCGTGCGCT- 169
**** * * * * * * ** * ***
consensus_56#0 CACACTGGAAAACATCAAAATTCAAAAGAAAAAGAAAAATCGAGTTTTT---TACATTCA 237
consensus_56#1 TGCAATTAGTACGACGCGAGTACGAAACAGAGAGCGGGACGGTACTATAGCGTGCACGCG 229
** * * * * * * *** * * ** * * * * * ** *
consensus_56#0 AAGA-ACAGCGAAACCGTT-------ACGCTTCCAGTTG-----CGCGATATTCCAC--- 281
consensus_56#1 TGTACACTGTAAAACTGTTTTGGCAAACGAATCTAGTCGAAATTCAAAACCGTTCACTCC 289
* ** * **** *** *** ** *** * * * * ***
consensus_56#0 GCTGACACGCACGCTGAACG--AGCAGCGGAAGAGGGGTGAG---AGGAGTGGTGAAGAA 336
consensus_56#1 ACTCACTTGTGTGTTGGGTGTGAGTCGCCGTACACGTATCGGTTTAGGCGTTCTTTAAAG 349
** ** * * ** * ** ** * * * * * * *** ** * * *
consensus_56#0 AGAA-GCCATTTTTTTTTATTGGGTAGCCAGGGAAGTGAAT----AGAATCGTGTAAGTG 391
consensus_56#1 CGATCACTCCTTTTCTGTTTCGGCTGCTTTAGGGGGAAAATCTCAAAAATTGAGCAAAAA 409
** * **** * * * ** * ** * *** * *** * * **
consensus_56#0 TGCGTGCTTGTTTTGCTTTCCGTTCGCTTCTCTGCTGTAGTGTGCGTGCGTTCCATTGAT 451
consensus_56#1 GCTACTCATATACTAAAACAAGATATCAGATAAGACAGATAGAGATAAAGATGAAGAGAA 469
* * * * * * * * * * * * * * * **
consensus_56#0 CCTGCCAGCGCATTTTTGGAGGATGAG--------CAACTCCGTTCAC--CGGCCTGGGG 501
consensus_56#1 AAAAATGAGATAAATTCACAAGAGGGAGACAACACTAACACGGGTCGCTTCACTTTACGG 529
* ** * ** * *** * * ** * * * **
consensus_56#0 CCATTCTTGCTTAATAAAAAAAAATGTGTGGT--CGCTCGTTTGTTTCTCTCTCTCTCTG 559
consensus_56#1 TTTTCTCTCACTCACGGTGTAGCGTCCGTCATGACGCTC-TCTCTCTCTCTCTCTCTCTG 588
* * * * * * ** * ***** * * * **************
consensus_56#0 CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 619
consensus_56#1 CTACGTGCACGCGAACATACACTGTTTTCGAGTAGGCTTTTTTAACACGATCATAACGAA 648
************************************************************
consensus_56#0 AGAGATAGAGAGAGCGCAGAGAGAGAGTTTGTGTAAAAGAGCGTCCGCTCAAGAGCGCGA 679
consensus_56#1 AGAGATAGAG-------------------------------------------------- 658
**********
consensus_56#0 GAGAGCGCGGCGCTACGGAGAACGCTTGCGCGGCAGTGCGCACATAGCAGCGTGCAGAAT 739
consensus_56#1 ------------------------------------------------------------
consensus_56#0 TGTTACTAGTTGNGGNACT 758
consensus_56#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||