cluster # 5614

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Anopheles gambiae
cluster # 5614 cluster # 5614 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5614#0 length = 1445 sequences # 3

consensus_5614#1 length = 241 sequences # 1

consensusID : consensus_5614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1445
fasta sequence

                              [CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGTCCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACAAGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGCCCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCTTCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTGCCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCATTGAGGCCGTGTTCGAGAACATCGACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGAACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTACGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGGGCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGGACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGAAAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGCCATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCAAGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCGACATGGCC]

[+] EMBL BM605922             [CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGTCCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACAAGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGCCCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCTTCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTGCCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCATTGAGGCCGTGTTCGAGAACATCGACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM639994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGAACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTACGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGGGCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM620240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgCGCATCCTCTCGACCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGGACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGAAAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGCCATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCAAGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCGACATGGCC]




>consensus_5614#0
CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGT
CCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACA
AGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGC
CCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCT
TCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTG
CCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGG
AGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGC
GCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGA
GCTACGAACCGTTCCGCCAGACCGATATCGTCATTGAGGCCGTGTTCGAGAACATCGACA
TTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCGCCA
CGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGAACG
TCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTACGC
ATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGGGCA
AGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGACCA
TGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACAAGA
TGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTATCG
ATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCGGTG
GCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGGGCA
AGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACGCTC
TCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGGACA
TGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGAAAA
TCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGCCAT
TCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCAAGA
TGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCGACA
TGGCC

consensusID : consensus_5614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [CCGCCCACGCGTCCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCGACAT]

[+] EMBL BM586798             [CCGCCCACGCGTCCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCGACAT]




>consensus_5614#1
CCGCCCACGCGTCCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGGAGG
CGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGCGCA
AGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGAGCT
ACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCGACA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5614#0      CCGCCCACGCGTCCGAGAACAAAGTGTTCGAGAAGGCACGCGAACAGGTGATGAAGATGT 60
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CCGGCGGTCTGTACCCGGCTCCGCTCAAGATTCTGGACGTGATCCGCGTCGGTGTGGACA 120
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      AGGGCCAGGAAGCCGGGTACGAGGCGGAGCGTAAAGGATTTGGCGAACTGTCGCAAACGC 180
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CCCAGTCGAAGGGTCTGATTGGCCTGTTCCGTGGCCAAACCGAGTGCAAAAAGAATCGCT 240
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      TCGGCAAGCCGGCGAACCCACCGAAAACGATTGGCGTGCTGGGAGCGGGTCTGATGGGTG 300
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CCGGTATCGTGCAGGTCAGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGG 360
consensus_5614#1      CCGCCCACGCGT---CCGGCATCGACAAGGGCTATCAGGTGATAATGAAGGACACGACGG 57
                      ***    ** *     * ******************************************

consensus_5614#0      AGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGC 420
consensus_5614#1      AGGCGGGACTGGGTCGCGGTATCGGCCAGGTCCAGAACGGTCTGCAGGGTGCTATCAAGC 117
                      ************************************************************

consensus_5614#0      GCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGA 480
consensus_5614#1      GCAAGCGCATCAGTGCGATCGAACGCGATCAGATCCTGTCGAACCTTACCTCCACGCTGA 177
                      ************************************************************

consensus_5614#0      GCTACGAACCGTTCCGCCAGACCGATATCGTC-ATT--GAGGCCGTGTTCGAGAACATCG 537
consensus_5614#1      GCTACGAACCGTTCCGCCAGACCGATATCGTCCATTTGGAGGCCGTGTTCGAGAACATCG 237
                      ******************************** ***  **********************

consensus_5614#0      ACATTAAGCACCGCGTCATCAAGGAGCTGGAGCAGGTGGTGCCGAAGCACTGCATCATCG 597
consensus_5614#1      ACAT-------------------------------------------------------- 241
                      ****                                                        

consensus_5614#0      CCACGAACACGTCCGCTATTCCGATCACTAAGATCGCTGCCGGCAGTTCTCGACCGGAGA 657
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      ACGTCGTTGGCATGCACTACTTCTCCCCCGTTGACAAGATGCAACTGTTGGAGATTATTA 717
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CGCATCCGGGCACGTCCAAGGAGACGGCGGCTGCTGCCGTCGAGGTGGGCCTGCGACAGG 777
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      GCAAGGTGGTCATCACCGTGGGTGACGGACCCGGTTTCTACACGACCCGCATCCTCTCGA 837
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CCATGCTGTCAGAGGCAATCAGACTGCTGCAGGAGGGTGTCGATCCGAAGGATCTCGACA 897
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      AGATGACCAAGACGTTCGGATTCCCGGTCGGTGCGGCCACGCTCGCGGACGAGGTCGGTA 957
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      TCGATGTGGGAGCGCACATTGCCGTCGATCTGGCGAAGGCGTTCGGCGACCGGTTCTCCG 1017
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      GTGGCAATCTGGGCGTTATGGAGGACCTGGTTAAGGCCGGCTTCATGGGACGCAAGTCGG 1077
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      GCAAGGGTGTGTTCGTGTACTCGGGCGGTCGCAGCAAGAACCGCGAGGTGAACCAGGACG 1137
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CTCTCGCCATCATGAAGCAGAAGTACGCCCTGCAGTCGCGCGGTGCTAACAGCGTGGAGG 1197
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      ACATGCAGCTGCGCATGGTTTCGCGCTTTGTGAACGAAGCCGTCCTCTGTCTGGAGGAGA 1257
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      AAATCCTGGACAGCCCCCTGGAGGGTGATGTTGGTGCCGTGTTCGGTCTGGGCTTCCCGC 1317
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      CATTCACCGGTGGACCGTTCCGCTGGGTGGACCAGTACGGTGCGGAACGGCTCGTCAGCA 1377
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      AGATGCGCTCGTACGCCGATCTGTACGGTGCTCCGTTCGTGCCGGCCCAAACCCTGCTCG 1437
consensus_5614#1      ------------------------------------------------------------
                                                                                  

consensus_5614#0      ACATGGCC 1445
consensus_5614#1      --------