cluster # 5621

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Anopheles gambiae
cluster # 5621 cluster # 5621 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5621#0 length = 956 sequences # 3

consensus_5621#1 length = 164 sequences # 1

consensusID : consensus_5621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 956
fasta sequence

                              [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC]

[+] EMBL BM639837             [CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACGAGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTTGTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCA                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM598946             [                                                                                                                                                                                                                                                ccgCTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTGCATCGCCAACAACAAACGTCCACCGTTCGTCAA      CACCATCACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGTCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATCAGCGGCACGATCCAGCTGACCTGTGAGCGATTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTCGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCAGCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCA                                                                     ]
[+] EMBL BM631674             [                                                                                                                                                                                                                                                                ccgGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATGCAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTACTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAACACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGCCTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGTGGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGGCACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGTTGCGCTGCACTTCAACCCCCGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAAGGGCTGCTGGGGCCGGGAGGAGGTGGCGTCCCCGCTGTCGTTCAATTTGCACCGCGGCCAACGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCGGCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGAAAGATTTGCACACTGGAGGTGAAGGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC]




>consensus_5621#0
CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACG
AGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTT
GTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATG
GACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA
CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATG
CAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTA
CTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAAC
ACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGC
CTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGT
GGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGG
CACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGT
TGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAA
GGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCA
GCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCG
GCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAA
GGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC

consensusID : consensus_5621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG]

[+] EMBL BM587017             [GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG]




>consensus_5621#1
GGAGATAGTTGTGTGCACCACATACACACACACAGAGGTTGGATTCGTGATGGACAAGCT
GATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGACGACTTGC
TAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5621#0      CCGCACAGCCGTACAGTGCCGTCCGGAGCAGCAATATAAGGAGATAGTTGTGTGGTAACG 60
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      AGATTCCGATTACTCACCCCCTTGTAACACACACACATATAGCCGTTCGTGGTTGTTCTT 120
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GTAAAGTGTAGAGCGTAACGTTGCACCACATACACACACACAGAGGTTGGATTCGTGATG 180
consensus_5621#1      -------GGAGATAGTTGTGT-GCACCACATACACACACACAGAGGTTGGATTCGTGATG 52
                             * ***  **   ** **************************************

consensus_5621#0      GACAAGCTGATATAGCTCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 240
consensus_5621#1      GACAAGCTGATATAGATCTCGAATGGCCGTACTTGCCTTTCTGGCGCTTAGTATTGGCGA 112
                      *************** ********************************************

consensus_5621#0      CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGGACGGAATG 300
consensus_5621#1      CGACTTGCTAGCTTACGGTGGCGCTCTGCTCGATTGTCGCGCCAGTTCGTGG-------- 164
                      ****************************************************        

consensus_5621#0      CAAATCGCTGCTGGCCTCGACACGCAACCAGCGCCAGTTTGAGGCCCTTCTGAAGCGCTA 360
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CTACCCGCCGCACGACGACAGTGCTACATCGCCAACAACAAACGTCCACCGTTCGCCAAC 420
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      ACCACCACCAACACCGCCGTCCGAAATGTCGACGGAATCGATCGACAGTTGCGACTTTGC 480
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CTACCAGGAAGCGCCATCGCCCGGTTCGATCAGCCTGGACAAAAGCTCCTCCACCGAGGT 540
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGTCCACACGGTCGAAAACATTACGGAAGTGTCGCCCGGGCTGTGCTTCGTCATTAGCGG 600
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      CACGATCCAGCTGACCTGTGAGCGGTTCTCCATCAATTTGCTGCTGAAAAATGGTGACGT 660
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      TGCGCTGCACTTCAACCCACGGCTGCCCCAGAACTACATCGTGCGCAACTGCCGCGTGAA 720
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGGCTGCTGGGGCCGGGAGGAGGTGGCGTCTCCGCTGTCGTTCAATTTGCACCGCGGCCA 780
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GCGCTTTGCCGTCCAGGTGCTCGTCACGGACAAGGAGTTTCTGATCTGCGTCAATGGGCG 840
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GCACTTTAACGCGTTCCAGCACCGGCTGCCTTATCGGAAGATTTGCACACTGGAGGTGAA 900
consensus_5621#1      ------------------------------------------------------------
                                                                                  

consensus_5621#0      GGGCGATGTGCGCGATGTGGCCGTTGACCAGTGCTACATGGAGTGCTATCCGCAGC 956
consensus_5621#1      --------------------------------------------------------