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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1156 fasta sequence
[CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG]
[+] EMBL BM629129 [CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAA ]
[+] EMBL BM589302 [ ccGGCGGAAGAGAAAAAACAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAGCTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACATTGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGACGCCGAAAGACAAGGCCGCCATCCGCAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGCCGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAGGAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAATTACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTTGGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAAGTTGTGAACAAGGATCGCTTCCTGGGGCAGAGAAGGCAGCGCAAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACAC ]
[+] EMBL BX619859 [ CTTCC CGGGCAGAGAGAGCAGCGCGAACGGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGATGATTCACCTTGGAGGACAATGTTTGCTCCGGCGGGATCCGCTGTAAAACTACTCGTTCTTGTAGAAACCGCCCTTTCGGGACACATTCTTGTTAGAAGTACGCGGCATAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTACATAACACAAAAAACAAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCATAATTCCGACCGATGCCAATTGAAACCTCGACGATCATCACAATCAGACTAATTTGCTCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACGACTACTTACAACAGGTTGAAGTTAGTAGACAAACATCCACGCAAAGACAATTTCCCCCTCTGAGAANGAAATGCCACTCACGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAAGCCCTGTGATGATTGCACGCNGCAGCCATATTGTACTATTACACGCAGCGAAACCGCACATTCTCGATGAACNGCGGGCCCCAACGACGACACACACGATCTATTG]
consensusID : consensus_5646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT]
[+] EMBL BX469150 [AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAGATCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTTGTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAACTACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGAGAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTTCCCACCAGTTTACATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAACATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTCAGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAATATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGTAGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCACGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTNTTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCGCAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTTANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5646#0 CCGGGCGGAAGAGAAAAAGCAAAAGGAGGAAAAGAAGCGCTATCTACTGCGGAAGCTCAG 60
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 CTTCCGGCCGACGGTCGACGAGCTGAAGGAGAAGAAAATTATTCGTTTCAACGATTACAT 120
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 TGAGGTGACGCAGGCGCACGACTACGACCGGCGGGCGGACAAACCGTGGACACGCTTGAC 180
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 GCCGAAAGACAAGGCCGCCATCCGTAAGGAATTGAACGAGTTCAAGAGCTCCGAAATGGC 240
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 CGTGCACGAAGGTAGTCGACATCTTACCAGGTTTCATAGGCCATGACAACTGCAAGGAAG 300
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 GAAGGCCAAACAGTGCAAGCAATTTGCCATTCATTACGTTTTACATTTCTCATTAGAAAT 360
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 TACTTCCATCCAACGTCAGACCGTGTACATCTGAGTGTGGCACCGCGCGCAACACGCTTT 420
consensus_5646#1 ------------------------------------------------------------
consensus_5646#0 GGTTTGTTGTTTATGGTAGGGCCGATAACTCAACGCTTCGATTAA-GTTGTGAACAAGGA 479
consensus_5646#1 --------------AGAATCGCACGAGGTGCTACGCTTCGATTAACGTTGTGAACCAG-A 45
* * ** * ************* ********* ** *
consensus_5646#0 TCGCTTCCAGGGGCAGAGAGAGCAGCGCAAACG-GTTCTTGCTGTGCAGCACCAACATTT 538
consensus_5646#1 TCGCTTCCTGGGGCAGAGAGGGCAGCGCAAACGAGTTCTTGCTGTGCAGCACCAACATTT 105
******** *********** ************ **************************
consensus_5646#0 GTCCTTGG-AGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 597
consensus_5646#1 GTCCTTGGTAGCATTTGCCTTGGAGGATAATGTTTGCTCCGGCGGGTTTCGCTGTAAAAC 165
******** ***************************************************
consensus_5646#0 TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAA-GTACGCGGC-A 655
consensus_5646#1 TACTCGTTCTTGTAGAAGCCGCCCTTTCGGGACACATTCTTGTTAAAAAGTACGCGGCGA 225
************************************************ ********* *
consensus_5646#0 TAGCCAGTTGCTAGCATAGTTACTTGTGCGGCACTGTATTAGTATTTTCCCACCAGTTTA 715
consensus_5646#1 GAGCCAGTTGCTAGCATGGTTACTAGTGCGGCACTGTATTAGTATTT-CCCACCAGTTTA 284
**************** ****** ********************** ************
consensus_5646#0 CATAACACAAAAAACAAGAAA--------TCGGTTCGACAAAGAGATTCCAGGATTGCAA 767
consensus_5646#1 CATAACACAAGAAAGAAGAAACACAGAAATCGGTTCGACAAAGAGATTCCAGGATTGCAA 344
********** *** ****** *******************************
consensus_5646#0 CATTTCCTTCA-TAATTCCGACCGATGCCAATTGAAACCTCGACGAT-CATC-ACAA-TC 823
consensus_5646#1 CATTTCCTTCACTAATTCCGACCGATGCCAATTGAAACCTCGACGATACATCGACAAGTC 404
*********** *********************************** **** **** **
consensus_5646#0 AGACTAATTTGC-TCCTAAGCTTACATGCAAGGTAGAATTCCTGGTAACATGAAGATGAA 882
consensus_5646#1 AGACTAATTTGCGTCCTAAGCTTACATGCAAGGTAGAATTCCCGGTAACATGAAGATGAA 464
************ ***************************** *****************
consensus_5646#0 TATTTTAAACACCCAACCACTCTAGAC-GACTACTTACAAC-AGGTTGAAG---TTA-GT 936
consensus_5646#1 TATTTTAAACACCCAACCACTCTAGACAGACTACTTACAANCAGGTTGANACGTTTACGT 524
*************************** ************ ******* *** **
consensus_5646#0 AGACAAACATCCACGCAA--AGACAATTTCCCCCTCTG----AGAANGAAATGCCACTCA 990
consensus_5646#1 AGACAAACATCCACGCCACAAGACAATTTCCCCCTCTTGAACAAAGGAAATTGCCACTCA 584
**************** * ***************** * * ** *********
consensus_5646#0 CGGGAGTCTATCTCAGCTTGNNTTCGCACGTACTGTAACTGTTATTTGCAGTCATGATAA 1050
consensus_5646#1 CGGGACTATACTACAGCGTTTGGGGTGTTNCGCCACAATACATGGTAAAACTCGTGACTN 644
***** * ** **** * * ** * * * ** ***
consensus_5646#0 GCCCTGTGATGATTGCACGCNGCAGCCATATTGT--ACTATTACACGCAGCGAAACCGCA 1108
consensus_5646#1 TTTTTGCNNGGTCCACTAGATACAGGCCCTCTGTGGATGATTTGGCACCGCCGGGNAGCG 704
** * * * *** * *** * *** * * ** **
consensus_5646#0 CATTCTCGA----TGAACNGCGGGCCCCAA-CGACGACACACACGATCTATTG------- 1156
consensus_5646#1 CAATATTAGGTACTCATTTACAACCGGCAGTCGGNAAAACCCGNGACATTNCTCCGATTT 764
** * * * * * * ** ** * ** * ** *
consensus_5646#0 ------------------------------------------------------------
consensus_5646#1 ANCCGGGGGNGGGCCCCCAAACAGANGNAGACACACGACGAATCTANATGANTTGACAGG 824
consensus_5646#0 --
consensus_5646#1 GT 826
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||