cluster # 5650

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Anopheles gambiae
cluster # 5650 cluster # 5650 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5650#0 length = 851 sequences # 3

consensus_5650#1 length = 659 sequences # 1

consensusID : consensus_5650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 851
fasta sequence

                              [TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATCGCGA-CCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCGGGCACTAATACTGGTCGAGTGTGGTGCTACCGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCTCACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTCTCTCTCTCTCGCACGCGCTTCT]

[-] EMBL BM637928             [TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATCGCGA CCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCGG                                                                                                                                                                             ]
[-] EMBL BM645135             [                                                        GATCGCGACCCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM657174             [                                                                                                                                                                            ccgCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGGCACTCTGTACGTGTGGAGGA  TGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGGCTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGTGTGCACTAATACTGGTCGAGTGTGGTGCTACCGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCTCACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTCTCTCTCTCTCGCACGCGCTTCT]




>consensus_5650#0
TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATC
GCGACCCAATTACTGACGGACCGCGCACCTTTTGGGGCGTTGTTATCGCTCTGTTTTGTT
CGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCT
CTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGG
GCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCGGAAGCACTGATTAGG
CACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATG
TTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGC
AGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCAT
CGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTATATCG
AACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGA
ATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGT
TTTCACGGACCCGCGCGGGCACTAATACTGGTCGAGTGTGGTGCTACCGCTTCTGCTTCT
GCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCTCACCGTTTGCT
CAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTCTCTCTCTCTCG
CACGCGCTTCT

consensusID : consensus_5650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [CTCGTCTGACTACACCGATCGCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG]

[-] EMBL BM589616             [CTCGTCTGACTACACCGATCGCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACCGCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG]




>consensus_5650#1
CTCGTCTGACTACACCGATCGCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCG
TTGTTATCGCTCTGTTTTGTTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTATCTCTCTCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTC
CTTTCCCTTTGTGATTGGGGCGACACAGGGCACACACCGTTCACGCACGCACGCACGCAC
GCACGCACACACCCGGAAAGCACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGT
GTGTGTTTATTTGTTGGAATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGT
GGTCTCGTGTTCGTGATTTTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCC
TCACATCAGCACTGCACCACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACA
GAAACGCGTCTGCACACCGCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAG
GTTTGTTGGTGGCCTGGTAGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTT
CAAAACCCGGTGCCGTGTCCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5650#0      TCTTCTTCTTCTTTCTCGCTCTTTGTCCGCTGCCACACTTCTCGTCTGACTACACCGATC 60
consensus_5650#1      ----------------------------------------CTCGTCTGACTACACCGATC 20
                                                              ********************

consensus_5650#0      GCGACCCAATTACTGACGGACCGCGCACCTTTT-GGGGCGTTGTTATCGCTCTGTTTTGT 119
consensus_5650#1      GCGACCCAATTACTGACGGACCGCGCACCTTTTTGGGGCGTTGTTATCGCTCTGTTTTGT 80
                      ********************************* **************************

consensus_5650#0      TCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTC 179
consensus_5650#1      TCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTC 140
                      ************************************************************

consensus_5650#0      TCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTC--------CTTTCCCTTTGTGATTGGGG 231
consensus_5650#1      TCTAGCGCGCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCCCTTTGTGATTGGGG 200
                      ********************************        ********************

consensus_5650#0      CGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACC--GGAAG 289
consensus_5650#1      CGACACAGGGCACACACCGTTCACGCACGCACGCACGCACGCACGCACACACCCGGAAAG 260
                      *****************************************************  * ***

consensus_5650#0      CACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGTGTTTATTTGTTGGA 349
consensus_5650#1      CACTGATTAGGCACTCTGTACGTGTGGAGGATGTGTGTGTGTGTGT--TTATTTGTTGGA 318
                      **********************************************  ************

consensus_5650#0      ATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATT 409
consensus_5650#1      ATGTTTACATGTTCGGGGCACACATACACATTGGTTTGGGGTGGTCTCGTGTTCGTGATT 378
                      ************************************************************

consensus_5650#0      TTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACC 469
consensus_5650#1      TTGCGACTGGCAGGCGAGTGCTTCTTCTTCCTGCAGATGCCCTCACATCAGCACTGCACC 438
                      ************************************************************

consensus_5650#0      ACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACC 529
consensus_5650#1      ACACACATCATCGGCGCGGAAACAAATAAAAACACGCAGACAGAAACGCGTCTGCACACC 498
                      ************************************************************

consensus_5650#0      GCCGTATATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGT 589
consensus_5650#1      GCCGTAAATCGAACAGGCCAGATGGGTCTATGGTGCAAATAGGTTTGTTGGTGGCCTGGT 558
                      ****** *****************************************************

consensus_5650#0      AGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGT 649
consensus_5650#1      AGGGAGCGAGAATGGTGAGCCGTGAGATGGAACAAAAACGTTCAAAACCCGGTGCCGTGT 618
                      ************************************************************

consensus_5650#0      CCGTCTGCCGTTTTCACGGACCCGCGCGGGCACTAATACTGGTCGAGTGTGGTGCTACCG 709
consensus_5650#1      CCGTCTGCCGTTTTCACGGACCCGCGCCCACGCGTCCGCGG------------------- 659
                      ***************************   * *     * *                   

consensus_5650#0      CTTCTGCTTCTGCTTCTGCTGCTGCTGCTTCTACTACTGCTGCTGCTGCTTGCGCCATCT 769
consensus_5650#1      ------------------------------------------------------------
                                                                                  

consensus_5650#0      CACCGTTTGCTCAATTTTGTCTCCAAAAAGTGCTCAATGCGCTGGAGCTCTCTCTCTCTC 829
consensus_5650#1      ------------------------------------------------------------
                                                                                  

consensus_5650#0      TCTCTCTCTCGCACGCGCTTCT 851
consensus_5650#1      ----------------------