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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence
[CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT]
[+] EMBL BM654337 [CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATCTACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAGGGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTTTCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTTAGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACGAGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGTCTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAAC ]
[+] EMBL BX617448 [ GTTTTAAATTACGGTTCGGCATAGAGGCTCTTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAG ]
[+] EMBL BX628898 [ GGCTACAATGCCACAGCAATGATATTCCTTTTGAGATAACAACAACAAGTCCCCTAGGCACACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCAAGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAGGGAGGAGTCCGTTAGCGTTTAAAGCAAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCGGCCGGCCGTTCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT]
consensusID : consensus_5655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC]
[+] EMBL BM589767 [CCGACGTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGAGGAGGGAGGGTGTGCCTAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCAATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAACAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGGAACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTTTTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGCAAAAAAGCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATGAGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCTGTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGGCCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATGATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5655#0 CCGATCGGAGGACCACTGTCCATCAACACGAACCACCAGGGACCGCAGAACATTCCCATC 60
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 TACCAGCAGCAGCGGTAAGCTTCGGACGGTCGGAAAACGGGAAGCGGGGACAGACCCAAG 120
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 GGAAGGCATCCGTCCCGATCGCCCAACAAAAACGACACATTTTGACCAATGCCACTTTTT 180
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 TCGGTTCGATAATCGGTATGGGTACAAGGGAGGTGTTTTTGATGTTCGCCTAGCGGTTTT 240
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 AGTCGGTATTCTTTTTAACTGAAACTTTCCCTTTAAAAGCCATAAACTGAACGTGGGACG 300
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 AGGAGCAGAATTGGTTTGTTGTTTTGTTTACCGCTCGATTTACTCTGCTGGCGGCAGTGT 360
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 CTGTGTGTATTCGAATTGTGTAGAGTTTTGGTTTTAAATTACGGTTCGGCATAGAGGCTC 420
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 TTGGCCTTTCGCAGGGCCAAAAAGGGCTACAATGCCACAGCAATGATATTCCTTTTGAGA 480
consensus_5655#1 ------------------------------------------------------------
consensus_5655#0 TAACAACAACAAGTCCCCTAGGCA-CACCCTCCCTCCTCATCCTCCTCCTTCGTTCACCA 539
consensus_5655#1 -----CCGAC--GTCCCCTGCCTAATGCCCTTGCCCTTGGTGAACGAAGGAGGAGGATGA 53
* ** ******* * **** * * * * * * * *
consensus_5655#0 AGTGCAAGGGCATGAGGCAGTGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 599
consensus_5655#1 GGAGGGAGGGTGTGCC-TAGGGGACGTGAAGCGCGGATTGGGCAACGCTGTTTGCCGGCA 112
* * **** ** ** ***************************************
consensus_5655#0 ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 659
consensus_5655#1 ATAATAGAAGTAATGCTGCATATATTACGTTTTTGAAACAGTATAGCGATACAACAACAA 172
************************************************************
consensus_5655#0 CAAAAAAGGCTTCTGTCAGTGTGATTAGGCGGAAGGAAGGAAGGGAGAAATTAATAGCGG 719
consensus_5655#1 CAAAAAAGGCTTCTGGCAGTGTGATTAAGCGGAAGGAAGGAAGGGAGAAATTGATAGCGG 232
*************** *********** ************************ *******
consensus_5655#0 AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 779
consensus_5655#1 AACCTGTGTTGAATTATTAGTAGCAAAACGCACGTGCGTGTGTGTGTGAGGGCTTATTTT 292
************************************************************
consensus_5655#0 TTGAACATTCGCAGAATCTACAAACCGATTAGA-GGGAGGAGTCCGTTAGCGTTTAAAGC 838
consensus_5655#1 TTGAACATTCGCAGAATCTACAAACCGATTAGAAGGGGGGAGTCCGTTAGCGTTTAAAGC 352
********************************* *** **********************
consensus_5655#0 AAAAAAAAAGCAAGGGAAGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 898
consensus_5655#1 AAAAAA---GCAAGGAGGGAAGAATATATAGTAGGATATGTATTTATATACGATATCATG 409
****** ****** ******************************************
consensus_5655#0 AGGC-GGCCGGCCGTTC-GGTATGGTGGGGAGGCGTATTTGTTATCTACCC-GCGTGGCT 955
consensus_5655#1 AGGCCGGCCGGCCGTTCCGGTATGGTGGGGAGGCGTATTTGTTATCTACCCCGCGTGGCT 469
**** ************ ********************************* ********
consensus_5655#0 GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGT------------------------ 991
consensus_5655#1 GTCGCAAAGGAAACCCGGAAGAGTCGCCCGGAAGGTTGTTTTGGGGGGGGGGGGGTGGGG 529
************************************
consensus_5655#0 ------------------------------------------------------------
consensus_5655#1 CCCACCCGTAAAGGGGTGAACATTTATAGATGGAGGCGAAGAATTGATGCAAAACCGATG 589
consensus_5655#0 ------------------------------------------------
consensus_5655#1 ATAGACGATGCTGTATAATAGTTGAGCTACGTACATACTACACACAAC 637
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||