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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence
[CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGT---GGCGGCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGATCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGCAAGGTAGGTGGCGGTGGTGGTGGGTACGATCGAGACGACTACAGGCGTACCGAGAAGGATTACCGGGGCNATGGAAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATNCAAGCACGAACGCGATCGATCACGCGACCGTGAT]
[+] EMBL BM590885 [CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGT GGCGGCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGAT ]
[+] EMBL BX623651 [ CATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGNGNTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGTGGAGGCGGCGGCGGCGGCGGCGGCGCCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGACCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGCAAGGTAGGTGGCGGTGGTGGTGGGTACGATCGAGACGACTACAGGCGTACCGAGAAGGATTACCGGGGCNATGGAAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATNCAAGCACGAACGCGATCGATCACGCGACCGTGAT]
consensusID : consensus_5660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCGCTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCGAGCTGCTGGAGGAAGCGGTCGAAGCGCTGAAGAAAAAGTACCAAGAGCAGCGCAAGAAGGACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGACCGGAACAACGGGTCGCACAACGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTGCCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGTGGCGGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTGTCCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCG]
[+] EMBL BM633694 [CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCGCTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCGAGCTGCTGGAGGAAGCGGTCGAAGCGCTGAAGAAAAAGTACCAAGAGCAGCGCAAGAAGGACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGACCGGAACAACGGGTCGCACAACGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTGCCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGTGGCGGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTGTCCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCG]
[+] EMBL BX601699 [ TTTATGAACGACTCATTCCGGACGGATGTGTTCGTGCGCTACCAGCCAGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5660#0 CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGG 60
consensus_5660#1 ------------------------------------------------------------
consensus_5660#0 ACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCG 120
consensus_5660#1 ------------------------------------------------------------
consensus_5660#0 CTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTT 180
consensus_5660#1 -------------CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCG 47
* ** ** * ** * ** * *** ** * * * *
consensus_5660#0 GTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACA 240
consensus_5660#1 CTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACC-GCGCGCAAGCACAACA 106
* ** *** ** ** * ** ** ** * * ** ** * * ** ***
consensus_5660#0 GTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCG 300
consensus_5660#1 TTC-CGCT---GCCGAACAATCCGCCGTGGTTCGTGATATTT-CGCGTCAGCGAGGACGA 161
** **** ** * ** *** ** ** *** * ** *
consensus_5660#0 CTCGCGGTCACGTTCGCGCTCGCCTCACT-CGCCGCACTATTCCACCGACAAGAGTGGCG 359
consensus_5660#1 CATGCTGG-ACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCG 220
* ** * **** ** *** *** * * * ** * * * ** * **
consensus_5660#0 GCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGC 419
consensus_5660#1 A-GCTGCTGGAGGAAGCGGTCGAAG--CGCTGAAGAAAAAGTACCAAGAGCAGCGC---- 273
* * ** ** ** **** ** ****** * * *** ****
consensus_5660#0 CGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGC 479
consensus_5660#1 --AAGAAGG-ACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGAC 330
***** ** ** *** *** ** * ** * * ** *
consensus_5660#0 CATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGG 539
consensus_5660#1 CG--GAACAACGGGTCGCACAA-CGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTG 387
* * * ** * **** ** * * * * * * * * ** * * *
consensus_5660#0 GCAAGGAGGACCGAAACAATGACAATCGCTAC-ACTAACGGCGCAGATCGTGATCGCGGC 598
consensus_5660#1 CCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGT 447
* ** * * * ** * **** * * * **** * *** **
consensus_5660#0 GATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTG-GAACACTCTCGCCGG-- 655
consensus_5660#1 GGC--------GGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGAC 499
* ** * ** * * * * * * ** ***** ******
consensus_5660#0 -GATCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGC--AAGGTAGGTGGCGGT 712
consensus_5660#1 TGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCT 559
** * * ** * *** * * * * **** **** * ** * * *** *
consensus_5660#0 GGTGGTGGGTACGATCGAGACGACTACAGGCGT-ACCGAGAAGGATTACCGGGGCNATGG 771
consensus_5660#1 CTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTG 619
* * * ** ** * * ** * * * * * ** ** * * *
consensus_5660#0 AAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATN 831
consensus_5660#1 T---CCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCC---CGGTCCCGCTCCCG 673
* * * * * * ***** ** *** ** * ** ** **
consensus_5660#0 CA-AGCACGAACGCGATCGATCACGCGACCGTGAT 865
consensus_5660#1 CACATCACAGTCGCGCTCG---------------- 692
** * *** **** ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||