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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1079 fasta sequence
[CCGCCCACGCGTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCCCGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACATACTCCCCAATTGGTATAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGCTGTTGGCTCATGATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGGGCTGCGGGCGGTACCTATAATGGGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGGCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACGATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGTCAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCCGTTCG]
[+] EMBL BM591380 [CCGCCCACGCGTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCCCGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACATACTCCCCAATTGGTATAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGCTGTTGGCTCATGATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGGGCTGCGGGCGGTACCTATAATGGGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGGCCGAACAACTAC ]
[+] EMBL BM598409 [ ccgGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCTCCAGGGTGTGCTGCGGGCGGTACCTATAAT GGCATCCCACCGGCCCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTGCTGGCCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACGATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGTCAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCCGTTCG]
consensusID : consensus_5667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAATAAGATGGCCCGAGGAGCTGGAACCTCTTATAGCAAATCCATTCCATCGACCTGCACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGTTGTTGGCTCACGATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCCTCCAGGGTGTGCTGCGGGCGGTACCTATAATGGCATCCCACCGGCCCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTGCTGGCCCG]
[+] EMBL BM591999 [CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAATAAGATGGCCCGAGGAGCTGGAACCTCTTATAGCAAATCCATTCCATCGACCTGCACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAAACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCCGTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGATGTAAATTTAGTAAATTTCAACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGTTGTTGGCTCACGATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACATATTGCGGTAGAAAAGAAGCTTATTCCGATCGTGCAGTGTTTGGTAGTGTTCGGTGCGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATGACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGTGCCCCGAAAAGGGTAGTAAATGTCCCTCCAGGGTGTGCTGCGGGCGGTACCTATAATGGCATCCCACCGGCCCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTGCTGGCCCG]
consensusID : consensus_5667#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CCGCCCACGCGTCCGAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAGCGGGAGCTAGTGGCGAATCGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGGTATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAATAGAAAATCTCGCCCAAACACCCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCGCTTGCATTAGGATGCGGTAAAACCATGAAACAATGCATGTGTCTGTATCTGCGTATGAAGGACCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGTGTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGATGGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAATTTGCATCTATTCCGCAACTACGAGGCCGCCAGCGATA]
[+] EMBL BM645834 [CCGCCCACGCGTCCGAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAGCGGGAGCTAGTGGCGAATCGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGGTATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAATAGAAAATCTCGCCCAAACACCCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCGCTTGCATTAGGATGCGGTAAAACCATGAAACAATGCATGTGTCTGTATCTGCGTATGAAGGACCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGTGTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGATGGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAATTTGCATCTATTCCGCAACTACGAGGCCGCCAGCGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5667#0 CCGCCCACGC--GTCCGCCCTTTTATACACCTGCTTATGAATTACGCTTCAAACGTATCC 58
consensus_5667#1 CCGGACAAACCGGACTGCGTGAAGGCACTGCTGCTTGCCGGAGCCGATACGAAT------ 54
consensus_5667#2 CCGCCCACGC--GTCCG---AAAGGCGCGA--GCATGATGGATGCGTTGCTTTCG----- 48
*** ** * * * * * ** * ** * *
consensus_5667#0 CGCTTCAACGTTTACCGCACATATTGAACAATTCCTGCACACA-TACTCCCCAATTGGTA 117
consensus_5667#1 ------AAGATGGCCCGAGGAGCTGGAAC--CTCTTATAGCAA-ATCCATTCCATCGACC 105
consensus_5667#2 ------ATGTTTATGAGCAAGGTAGAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACG 102
* * * * * * * * *
consensus_5667#0 TAATCGACGTAGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAA 177
consensus_5667#1 TG--CACTGATGAACCTTCTTCTACAGGTAATGTAGCCGATTTTCTTGTCAGCAATCCAA 163
consensus_5667#2 TCTTCTTCGCTGAAGGGTGGAGTGAACCTGCTG--GGCGATTTCGATGTCGGCGA--CGA 158
* * * *** * * * * ** * ****** **** ** * * *
consensus_5667#0 ACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCC 237
consensus_5667#1 ACAAACTGTTCACACAAGACATGAAACACGGCGGCACCCCGCTGCACTGGAGCTCCAGCC 223
consensus_5667#2 ACCGA-TGCTAACAGATGA-ACCGGCCGGTCCGGAGTCTCCCAAGACACCGACGGCAGA- 215
** * ** * *** * ** * * *** * * * ** * ***
consensus_5667#0 GTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGAT---GTAAATTTAGTAAATTTCA 294
consensus_5667#1 GTGAGGTATTGAACTCTTTAATAGAGCGTGGTTGCGAT---GTAAATTTAGTAAATTTCA 280
consensus_5667#2 ATGTGCTGGTGGCAGTGGTCAGCGAACGGATTCGCGGCCCCGTTCGTCCTGTGAAG--CG 273
** * * ** * * ** ** * *** ** * ** ** *
consensus_5667#0 ACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGC 354
consensus_5667#1 ACGGCCAAACTCCATTGCATGTGATGGTGGCACGCGACCGGTTGGAATGTGTCGTTGCGT 340
consensus_5667#2 GGAGCTAGTGGCGAAT-CGTACAATGGGCGCGGCCGACTGCTCTGTCTGGATGGTGGTGG 332
** * * * * * * **** ** **** * * * ** * ** * *
consensus_5667#0 TGTTGGCTCATG-ATGCTGAGATTGATGTGGTTGATAACTCTGGCAACACTCCACTGCAT 413
consensus_5667#1 TGTTGGCTCACG-ATGCTGAGATTGATGTGGTTGATAACTCCGGCAACACTCCTCTACAT 399
consensus_5667#2 TATCAGGGGACTTGTTTTGGCACAAATGCTTTTGGAAA---TAGAAAATCTCGCCCAAAC 389
* * * * * ** * *** *** ** * ** *** * *
consensus_5667#0 ATTGCGGTAGAAAAGAAGCTTATTCCGATCGTG-----CAGTGTTTGGTAGTGTTCGGTG 468
consensus_5667#1 ATTGCGGTAGAAAAGAAGCTTATTCCGATCGTG-----CAGTGTTTGGTAGTGTTCGGTG 454
consensus_5667#2 AC--CCATCGTGCATCTGTTCGACTGGATCGCCGGTACCAGTACTGGGGGAATTTTGGCG 447
* * * * * * * ***** **** * ** ** ** *
consensus_5667#0 CAGACTTTAACAAACCGAACAAGGATGGTAAAACGCCCCGCCACTTGGTCGGAAAGGATG 528
consensus_5667#1 CGGACTTTAACAAACCGAACAAGGATGGTAAAACACCCCGTCACTTGGTCGGAAAGGATG 514
consensus_5667#2 CTTGCATTAGGATGCGGTAAAACCATGAAACAATGCAT-GTGTCTGTATCTG--CGTATG 504
* * *** * * * * ** *** * ** * * ** ** * * ***
consensus_5667#0 ACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGT 588
consensus_5667#1 ACAGTGGCTCAAAGGATTCGATGATTCTGTACATTTTGCACTCGGTGGGTGCAAAACGGT 574
consensus_5667#2 AAGGA----CCAAGCGTTCGTCGGATCCCGGCCCTACCCAAGTGATCAGCTGGAAACGGT 560
* * * *** **** * ** * * ** * * * *******
consensus_5667#0 GCCCCGAAAAGGGTAGTAAATGTCC-TC--CAGGGTGGGCTGCGGGCGGTACCTAT-AAT 644
consensus_5667#1 GCCCCGAAAAGGGTAGTAAATGTCCCTC--CAGGGTGTGCTGCGGGCGGTACCTAT-AAT 631
consensus_5667#2 GTTGAAAGAGCAGCTGGGAGAGTTTACCGTCATGTCGGATATCAAACATCCTCGATTGAT 620
* * * * * * ** * ** * * * * * ** **
consensus_5667#0 GGGCATCCCACCGGC--CCAACCCGAAACGACGGAGCAGCGTGAACACATCCAGCAGGTG 702
consensus_5667#1 GG-CATCCCACCGGC--CCAACCGGAAACGACGGAACAGCGTGAACACATCCCGCAGGTG 688
consensus_5667#2 GGTAACGGGAGTGATGGCTGATAGGAAGCCAGTAAA---TTTGCATCTATTCCGCAACTA 677
** * * * * * *** * * * ** * ** * *** *
consensus_5667#0 CTGGGCCGAACAACTACCAAGTCACATCGCAACAGTGTGCCAAGTCTGATATCGAACACG 762
consensus_5667#1 CTGGCCCG---------------------------------------------------- 696
consensus_5667#2 CGAGGCCGCCAGCGATA------------------------------------------- 694
* * ***
consensus_5667#0 ATTCGTGCGACCATCCCCGAGGAGCGCGAACGGCCGGAAGTGAAAACAGTCGACGTCAGT 822
consensus_5667#1 ------------------------------------------------------------
consensus_5667#2 ------------------------------------------------------------
consensus_5667#0 CAAGAGCGTAAAGGCGCGAGCATGATGGATGCGTTGCTTTCGATGTTTATGAGCAAGGTA 882
consensus_5667#1 ------------------------------------------------------------
consensus_5667#2 ------------------------------------------------------------
consensus_5667#0 GAGGCTGCCTCTAAACCCACTTCCCCTACGTCCACGTCTTCTTCGCTGAAGGGTGGAGTG 942
consensus_5667#1 ------------------------------------------------------------
consensus_5667#2 ------------------------------------------------------------
consensus_5667#0 AACCTGCTGGGCGATTTCGATGTCGGCGACGAACCGATGCTAACAGATGAACCGGCCGGT 1002
consensus_5667#1 ------------------------------------------------------------
consensus_5667#2 ------------------------------------------------------------
consensus_5667#0 CCCGGAGTCTCCCAAGACACCGACGGCAGAATGTGCTGGTGGCAGTGGTCAGCGAACGGA 1062
consensus_5667#1 ------------------------------------------------------------
consensus_5667#2 ------------------------------------------------------------
consensus_5667#0 TTCGCGGCCCCCGTTCG 1079
consensus_5667#1 -----------------
consensus_5667#2 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||