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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence
[CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT-ACTTTTAAAAAGATGCGTAAG-ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG-AACGGATACGTTGAAAGTGCAACA-AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA-TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT]
[+] EMBL BM619133 [CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACTTTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCT ]
[+] EMBL BM655023 [ GGGCGACTTTGCACCAAACTCTTCGCTAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTATAATATTGTACGAAACCACAACGCACGAACCACTTAAATCCGATCACGAGGAGCAATGGTAATTAGGGCCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATT ACTTTTAAAAAGGTGCGTAAGAAAAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGGAAACGGATACGTTGAAAGTGCAACATGAACTATAGATGAAATGGTCGTGACAGAATACAAGCATCTATAC ATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAA TGAAACCGAAGCTTAAAGTGTATTGCGAGATATTATATTAATACTAT ]
[+] EMBL BX468718 [ GATGCGCATTCACTTTTAAAAAGATGCGTAAG ACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAAACGTTGAGG AACGGATACGTTGAAAGTGCAACA AAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAAGTGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAAGTAGAAAGACGCAGGGGGGAAATTGAAGAACAAAAGCGTTAACAGATGTATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTGGGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGCTCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTTAGAGT]
consensusID : consensus_5697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG]
[+] EMBL BM595668 [CCGCCCACGCGTCCGCTATAATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTAATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAAAGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAACAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGGTCGTGACAGAATTCAAGCATCTATACATATAACAGCCGGTATGAATCAAAGTCCGATTTAACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTAAAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACATCGATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTGATCATGCTGTGGGAGACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGAAAGAAAATAAATAGAAAACGCAGGGGGGGAAATTGAAGAACAAAACTTAACAGATGTATCGGAAAGAAGAGATTAGAGAAAACATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5697#0 CCGTGATAATTTAAGCGACGAATGGTAAACAAACTGGTAACAGGAAAGCTGCGGGCGACT 60
consensus_5697#1 ------------------------------------------------------------
consensus_5697#0 TTGCACCAAACTCTTCTCAAAGAGCAACAAACTGAAAGCATTACTAAACTAAAAGACTAT 120
consensus_5697#1 ----------------------------------------CCGCCCA-CGCGTCCGCTAT 19
* * * ****
consensus_5697#0 AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 180
consensus_5697#1 AATATTGTACGAAACCACAACACACGAACCACTTAAACCCGATCACGAAGAGCAATGGTA 79
************************************************************
consensus_5697#0 ATTAGGGCCGGAAGATGATGTAGAAGATGATTTCACATTTGATGCGCATTACTTTTAAAA 240
consensus_5697#1 ATTAGGGGCGGAAGATGATCTAGAAGATGATTTCACATTTGATGCGCATTATTTTTAAAA 139
******* *********** ******************************* ********
consensus_5697#0 AGATGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 300
consensus_5697#1 AGGTGCGTAAGACAAGGGTGTGGAGCGAGTGCAAAACTAACTAATACACCACAAATGTAA 199
** *********************************************************
consensus_5697#0 CAGCATTAAACGTTGAGGAACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 360
consensus_5697#1 CAGCATTAGACGTTGAGGGACGGATACGTTGAAAGTGCAACAAAACTATAGATGAAATGG 259
******** ********* *****************************************
consensus_5697#0 TCGTGACAGAATTCAAGCATCTATACAATATAACAGCCGGTATGAATCAAAGTCCGATTT 420
consensus_5697#1 TCGTGACAGAATTCAAGCATCTATACA-TATAACAGCCGGTATGAATCAAAGTCCGATTT 318
*************************** ********************************
consensus_5697#0 AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 480
consensus_5697#1 AACGGTAAATGAACCGGTCGACTCAACAAGCAACATAAAGTTAAATGAAACCGAAGCTTA 378
************************************************************
consensus_5697#0 AAGTGTATTGCGAGATATTATATTAATACTATACATCTATATATATACATACGTACACAT 540
consensus_5697#1 AAGTGTATTGTGAGATATTATATAAATACTATACATCTATATATATACATACGTACACAT 438
********** ************ ************************************
consensus_5697#0 CGATATATATATATAAAGCTATATATTGTATACAGAGTAGAGTTCGATCACGCTGTGGGA 600
consensus_5697#1 CGATATATATATA--AAGCTATATATTGTATACAGAGTAGAGTT-GATCATGCTGTGGGA 495
************* ***************************** ***** *********
consensus_5697#0 GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 660
consensus_5697#1 GACACAATTGAAATATAGAGATATAAGACATCATAGGGAATCAACGAGGTATGAAGAAGA 555
************************************************************
consensus_5697#0 AAGAAAATAAAGTAGAAAGACGCAGGGGGG-AAATTGAAGAACAAAAGCGTTAACAGATG 719
consensus_5697#1 AAGAAAATAAA-TAGAAA-ACGCAGGGGGGGAAATTGAAGAACAAAAC--TTAACAGATG 611
*********** ****** *********** **************** **********
consensus_5697#0 TATCGGAAAGAAAGAGATTAGAGAAAAGCATCTGCATTTTAAAGCAGCTGACGCAAGTTG 779
consensus_5697#1 TATCGGAAAGAA-GAGATTAGAGAAAA-CATCTG-------------------------- 643
************ ************** ******
consensus_5697#0 GGCAGAAACTAAAGCAACACACNACGGATCACGAACGAATAGATTGAAGAGAAGTAAAGC 839
consensus_5697#1 ------------------------------------------------------------
consensus_5697#0 TCGATGTTGTAAGNCAAAGCGAAGGAACAGCGACATAAAGCAAGCAAGCGAATTGACGTT 899
consensus_5697#1 ------------------------------------------------------------
consensus_5697#0 AGAGT 904
consensus_5697#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||