cluster # 5702

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5702 cluster # 5702 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5702#0 length = 645 sequences # 2

consensus_5702#1 length = 609 sequences # 1
consensus_5702#2 length = 571 sequences # 1

consensusID : consensus_5702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence

                              [CTGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGCGATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGAGAATGACAAAAGCTGTACCACGTATAATTCTGAATTTGCTCCTGATGATGAAGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTCTGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGTAAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTACTTGTACCGGAAAAAACTCAGACTTACAT]

[+] EMBL BX623149             [CTGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGCGATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGAGAATGACAAAAGCTGTACCACGTATAATTCTGAATTTGCTCCTGATGATGAAGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTCTGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGTAAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTACTTGTACCGGAAAAAACTCAGACTTACAT]
[+] EMBL BX610496             [                                                                                                                                                                                                                                                                                                           TCCGACCAGCTGTTAGTAAGCGGAAATGATAATCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAACAGGTAGTGTGCAGGAAAAGAAATTAGGGAATGAAAATACCTATTCCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCACCGTTACCAAGCGGGTATGAAACCCCGCCAGAGGAGACGAA                                                                          ]




>consensus_5702#0
CTGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATG
AAACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAG
CGATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAG
AGAATGACAAAAGCTGTACCACGTATAATTCTGAATTTGCTCCTGATGATGAAGAAGAAT
TGGCCAATGACTCCGAAGCATCAAAGTCTGATGAAGAGTGTTCGAAAAACGCGAATCTTT
CCGACCAGCTGTTAGTAAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAA
AGCAACTCAGACTAACAGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATT
CCTATAATAATTTTCAACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGG
TATCAAAAGAACACGAAGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAA
GCGGATATGAAACTCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAA
AATATCAAGCGATGTACTTGTACCGGAAAAAACTCAGACTTACAT

consensusID : consensus_5702#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [CCGGGCCGCTAATAAGCGGTTACGAAACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGCAATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGAGAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGAAGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTACGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGACGACTAGCGAGAAAGAGTCAAGCGATATGTCGGTATCGGAAAAAGCTGAGGCAATCTGACTTGCCGGCAAAGATATCAGGGAATGACAAAAGCTGTACCTCATATAATTCTGAATTTGCTGCTTCTGATGATGAAGAAGATTTGGTCAATGACTCCGGGGCATCAAATTCGAAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACAAATC]

[+] EMBL BM596302             [CCGGGCCGCTAATAAGCGGTTACGAAACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGCAATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGAGAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGAAGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTACGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGACGACTAGCGAGAAAGAGTCAAGCGATATGTCGGTATCGGAAAAAGCTGAGGCAATCTGACTTGCCGGCAAAGATATCAGGGAATGACAAAAGCTGTACCTCATATAATTCTGAATTTGCTGCTTCTGATGATGAAGAAGATTTGGTCAATGACTCCGGGGCATCAAATTCGAAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACAAATC]




>consensus_5702#1
CCGGGCCGCTAATAAGCGGTTACGAAACTCCACCAAACGAAACGAAAGAAGAGCGAAAGC
GACGACTAGACAGAAGGAATCAAGCAATTTGTCGGTACCGAAAAAAACTCCGATTAACTG
GCAATGTGCTCACAATAAAATCTGAGAAGGAAGAAACTTGTACCTCCAATAATTCTGAGA
TGGCTGCTTCTGATAATGGTGAAGAAGAAGATTTGGCCGTTGACTCTGAGGCATCGAAAT
CGGTGCTAATGAAAATCAGCAGTTACGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAA
CGAATATTTTCGAACCACCGCTAGTAAGCGGATATGAAACCCCACCAGAGGAGTCGAAAG
AGGAGCGAAGGCGACGACTAGCGAGAAAGAGTCAAGCGATATGTCGGTATCGGAAAAAGC
TGAGGCAATCTGACTTGCCGGCAAAGATATCAGGGAATGACAAAAGCTGTACCTCATATA
ATTCTGAATTTGCTGCTTCTGATGATGAAGAAGATTTGGTCAATGACTCCGGGGCATCAA
ATTCGAAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACA
AAACAAATC

consensusID : consensus_5702#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAATGATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTCTAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGAAACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGCGATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAACAATGACAAAACATGTACTTTTAAAAAATCTGCTTCTGATGATGAAGAAGATATGGGCAATAACTCTGAGACATCAAATTCCGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACCAAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGCCAGAAAGAATCAAGCGATGTACTTGTACCGGGAAAAACTGAGGGTATTTGGTGAGTTACAGGCAAAGAAATTAGAGCATGACAAA]

[+] EMBL BM615368             [CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAATGATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTCTAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGAAACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGCGATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAACAATGACAAAACATGTACTTTTAAAAAATCTGCTTCTGATGATGAAGAAGATATGGGCAATAACTCTGAGACATCAAATTCCGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACCAAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGCCAGAAAGAATCAAGCGATGTACTTGTACCGGGAAAAACTGAGGGTATTTGGTGAGTTACAGGCAAAGAAATTAGAGCATGACAAA]




>consensus_5702#2
CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAAT
GATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTC
TAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGA
AACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGC
GATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAA
CAATGACAAAACATGTACTTTTAAAAAATCTGCTTCTGATGATGAAGAAGATATGGGCAA
TAACTCTGAGACATCAAATTCCGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACC
GCCGCTACCAAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGACG
GCTGGCCAGAAAGAATCAAGCGATGTACTTGTACCGGGAAAAACTGAGGGTATTTGGTGA
GTTACAGGCAAAGAAATTAGAGCATGACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5702#1      ------------------------------------------------------------
consensus_5702#2      CCGGACAAATCCTCCAATAGCTCTGCACGTGCTCACGATAGGGAAGAATATTTGTCCAAT 60
consensus_5702#0      ------------------------------------------------------------
                                                                                  

consensus_5702#1      ------------------------------------------------------------
consensus_5702#2      GATTCCGTGACATCAGCACCGACGCTGGGGGAAGAAAAACAACAGTATCGCACAAATGTC 120
consensus_5702#0      -----------------------------------------------------------C 1
                                                                                  

consensus_5702#1      --------------------------------CCGGGCC---GCTAATAAGCGGTTACGA 25
consensus_5702#2      TAGTAAAATGCGTTGGAAAAGCATGCATCCTTCCGAACGCTGGCTATTAAGCGGTTACGA 180
consensus_5702#0      TGACGATGAGTATTCGAATAACGCTCGTCTTTTCGAACCGGCCCTAGTAAGCGGATATGA 61
                                                       **  *     *** ******* ** **

consensus_5702#1      AACTCCACCAAACGAAACGAAAGAAGAGCGAAAGCGACGACTAGACAGAAGGAATCAAGC 85
consensus_5702#2      AACTCCACCAGACGAAACGAAAGAAGAGCGAAAGCGACGACTAGATAGAAGGAATCAAGC 240
consensus_5702#0      AACCCCACCAGAGGAGTCGAAAGAAGAGCGAAGGCGACGTCTAGCGAGAAAGAGTCAAGC 121
                      *** ****** * **  *************** ****** ****  **** ** ******

consensus_5702#1      AATTTGTCGGTACCGAAAAAAACTCCGATTAACTGGCAATGTGCTCACAATAAAATCTGA 145
consensus_5702#2      GATATGTCGGTACCGGAGAAAACTCAAGCTAACTGGTAAGATGCAGACAAAGAAATCAAA 300
consensus_5702#0      GATTTGCCGGTATCGGAAAAAGCTGAGGCTAACTGGTATCTTGCCGACGAAGATATCAGA 181
                       ** ** ***** ** * *** **     ******* *   ***  ** *  * ***  *

consensus_5702#1      GAAGGAAGAAACTTGTACCTCCAATAATTCTGAGATGGCTGCTTCTGATAATGGTGAAGA 205
consensus_5702#2      CAATGACAAAACATGTACTTTTAAAAAATCTG---------CTTCTGATGATG------A 345
consensus_5702#0      GAATGACAAAAGCTGTACCACGTATAATTCTGAATT---TGCTCCTGATGATG------A 232
                       ** **  ***  *****     * ** ****         ** ***** ***      *

consensus_5702#1      AGAAGATTTGGCCGTTGACTCTGAGGCATCGAAATCGGTGCTAATGAAAATCAGCAGTTA 265
consensus_5702#2      AGAAGATATGGGCAATAACTCTGAGACATCAAATTC------------------------ 381
consensus_5702#0      AGAAGAATTGGCCAATGACTCCGAAGCATCAAAGTC------------------------ 268
                      ******  *** *  * **** **  **** ** **                        

consensus_5702#1      CGCGGATTCGTCTGACGAAGAGAATTTGAGCAAAACGAATATTTTCGAACCACCGCTAGT 325
consensus_5702#2      ------------CGACGAAGAGGATTCGAAATACACTCATCTTTCCGAACCGCCGCTACC 429
consensus_5702#0      ------------TGATGAAGAGTGTTCGAAAAACGCGAATCTTTCCGACCAGCTGTTAGT 316
                                   ** ******  ** **   *  *  ** *** *** *  * * **  

consensus_5702#1      AAGCGGATATGAAACCCCACCAGAGGAGTCGAAAGAGGAGCGAAGGCGAC---GACTAGC 382
consensus_5702#2      AAGCGGGTATGAAACCCCACCAGAGGAGACGAAAGAAGAGCGAAGGCGAC---GGCTGGC 486
consensus_5702#0      AAGCGGGTATGAAACTCCGCCAGACGCGATGAAAGAAGAGCTAAAGCAACTCAGACTAAC 376
                      ****** ******** ** ***** * *  ****** **** ** ** **   * **  *

consensus_5702#1      GAGAAAGAGTCAAGCGATATG--TCGGTATCGGAAAAAGCTG-----AGGCAATCTG--- 432
consensus_5702#2      CAGAAAGAATCAAGCGATGTA--CTTGTACCGGGAAAAACTG-----AGGGTATTTGGTG 539
consensus_5702#0      AGGTAGCGTGCAGGAAAAGAAATTAGAGAATGAAAATACCTATTCCTATAATAATTTTCA 436
                        * *     ** *  *           *  *  ** * **      *    *  *    

consensus_5702#1      ACTTGCCGGCAAAGAT-ATCAGGGAATGACAAAAGCTGTACCT-CATATAATTCTGAATT 490
consensus_5702#2      AGTTACAGGCAAAGAA-ATTAGAGCATGACAAA--------------------------- 571
consensus_5702#0      ACTTGCTTCTGATGATGAAGAAGATTTGGCAAATGAATCAGAGGTATCAAAAGAACACGA 496
                      * ** *     * **  *  *     ** ****                           

consensus_5702#1      TGCTGCTTCTGATGATGAAGAAGATTTGG-----TCAATGACTCCGGGGCATCAAATTCG 545
consensus_5702#2      ------------------------------------------------------------
consensus_5702#0      AGAGGATTCGAAAAATGCGCATCCTTCCGAACCTCCGCTACCAAGCGGATATGAAACTCC 556
                                                                                  

consensus_5702#1      AAATTGGAGGAAAACAACAGTATCACACAAGTGCCCAGCAAAGAGTATTCGAACAAAACA 605
consensus_5702#2      ------------------------------------------------------------
consensus_5702#0      ACCAGAGGAGACGAAAGAAGAGCGAAGGCGACGGCTGGNCAGAAAATATCAAGCGATGTA 616
                                                                                  

consensus_5702#1      AATC------------------------- 609
consensus_5702#2      -----------------------------
consensus_5702#0      CTTGTACCGGAAAAAACTCAGACTTACAT 645