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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1334 fasta sequence
[CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC]
[+] EMBL BM634199 [CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCT ]
[+] EMBL BM596620 [ ccgGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCA ]
[+] EMBL BM638865 [ ccgGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC]
consensusID : consensus_5706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG]
[+] EMBL BM655420 [CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5706#0 CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 60
consensus_5706#1 --------------------CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 40
*************************************
consensus_5706#0 ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 120
consensus_5706#1 ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 100
************************************************************
consensus_5706#0 GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 180
consensus_5706#1 GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 160
************************************************************
consensus_5706#0 GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 240
consensus_5706#1 GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 220
************************************************************
consensus_5706#0 TGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCG 300
consensus_5706#1 TGATACGAGCCAACAGAACGTGCTTTAG-------------------------------- 248
****************************
consensus_5706#0 CTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGT 360
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAG 420
consensus_5706#1 -------------ATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAG 295
*********************** ***********************
consensus_5706#0 AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 480
consensus_5706#1 AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 355
************************************************************
consensus_5706#0 CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 540
consensus_5706#1 CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 415
************************************************************
consensus_5706#0 TGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCG 600
consensus_5706#1 TGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCG 475
******************************* ***** **********************
consensus_5706#0 AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 660
consensus_5706#1 AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 535
************************************************************
consensus_5706#0 TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 720
consensus_5706#1 TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 595
************************************************************
consensus_5706#0 TGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCA 780
consensus_5706#1 TGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG-------------------------- 629
**************************** *****
consensus_5706#0 CGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCC 840
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 GCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGC 900
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGT 960
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGA 1020
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGC 1080
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAA 1140
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 CGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTG 1200
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGAC 1260
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 AGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGA 1320
consensus_5706#1 ------------------------------------------------------------
consensus_5706#0 TTTCGGTCATCTTC 1334
consensus_5706#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||