cluster # 5707

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Anopheles gambiae
cluster # 5707 cluster # 5707 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5707#0 length = 736 sequences # 3

consensus_5707#1 length = 674 sequences # 1

consensusID : consensus_5707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 736
fasta sequence

                              [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC]

[+] EMBL CNS09AD7             [CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGC AAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGCCATGTTGCTCTTGCGC]
[+] EMBL BM605270             [ ccgATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTATGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAACCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGATTTGGACCACGGCTCACTGGATCGAAGCAACTGGAGGATGCGATCGACTTCGCAGTCCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM596646             [   ccgGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAATCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGGCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGC                                                                                                                                                       ]




>consensus_5707#0
CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAAT
CAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAAT
CGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGC
GGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTGG
ATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACT
CGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGGC
AGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTGG
AACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTGA
AAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTGG
CTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGC
TGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAAC
GCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATGC
CATGTTGCTCTTGCGC

consensusID : consensus_5707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT]

[+] EMBL BM606072             [CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAATCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAATCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATGCGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTGGATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGACTCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGGCAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTGGAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTGAAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTGGCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCGCTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAACGCTTGCATATGAT]




>consensus_5707#1
CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAA
TCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA
TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG
CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTG
GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC
TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGG
CAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTG
GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTG
AAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTG
GCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG
CTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA
CGCTTGCATATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5707#0      -CACCATGCTTTGGATGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCATCTCAA 59
consensus_5707#1      CCGCGGACGCGTGGGTGAAGTTAGAATTTCTCAGCGCGCTTTGCGCAATACTCGTCTCAA 60
                       * *       *** ************************************** ******

consensus_5707#0      TCAATCTCGCAACAGCAGATCCTAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 119
consensus_5707#1      TCAATCTCGCAACAGCAGATCCGAACGAATGTGAACTCCCTCCTGGACTACGGGAAGAAA 120
                      ********************** *************************************

consensus_5707#0      TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 179
consensus_5707#1      TCGCTCAATATCAGCCGGTAGTGGATTCGATCTTCCAGCACATCGTTTCTGGTGAGTATG 180
                      ************************************************************

consensus_5707#0      CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGCTCACTG 239
consensus_5707#1      CGGGCAAGACTTGGCAGAGTTTGCTGGAGTTTACGGATCGGTTTGGACCACGGATCACTG 240
                      ***************************************************** ******

consensus_5707#0      GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 299
consensus_5707#1      GATCGAAGCAATTGGAGGATGCGATCGACTTCGCTGTGCAGGAAATGATCGCAGAAGGAC 300
                      ************************************************************

consensus_5707#0      TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGACGAGAATGGG 359
consensus_5707#1      TCGACAATGTGCATACCGAGGAAGCCATCGTATCACACTGGCAACGCGGCCGTGAATGGG 360
                      ************************************************* ** *******

consensus_5707#0      CAGAGCTGGTAGAACCATTTCAGAAGAAATTACCCATGCTGGGACTTGGAAAATCAGTTG 419
consensus_5707#1      CAGAGCTGGTAGAACCATTCCAGAAGAATTTACCCATGCTGGGACTTGGAAAATCAGTTG 420
                      ******************* ******** *******************************

consensus_5707#0      GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATCGCGGTGGAATCGTTTGAAGAGTTTG 479
consensus_5707#1      GAACTGCACCAGAAGGCATCCGGGCAGAAGTGATTGCGGTGGAATCGTTTGAAGAGTTTG 480
                      ********************************** *************************

consensus_5707#0      AAAACTTCACTGCAGACCAAGTGGAGGGAAAAATTGTAGTATTTGCTCCAGCATGGGTTG 539
consensus_5707#1      AAAACTTCACTGCAGACCAAGTGGAAGGAAAAATTGTAGTTTTTGCTCCAGCATGGGTTG 540
                      ************************* ************** *******************

consensus_5707#0      GCTATGGGCCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 599
consensus_5707#1      GCTATGGACCGACTGGTCGGTATCGATATGACTCTCCCTCAGTGGCGGCAAAGAAAGGCG 600
                      ******* ****************************************************

consensus_5707#0      CTGCAGCAGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 659
consensus_5707#1      CTGCAGCCGTGCTGATACGTTCGATGACTCCTTTCTCTATCGGAACGCCTCACACTGGAA 660
                      ******* ****************************************************

consensus_5707#0      CGCTTGAATACAATCCGGAAGTGCGGCGTATTCCTGCTGCAGCTATAACGGTAGAAGATG 719
consensus_5707#1      CGCTTGCATATGAT---------------------------------------------- 674
                      ****** ***  **                                              

consensus_5707#0      CCATGTTGCTCTTGCGC 736
consensus_5707#1      -----------------