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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence
[CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGTAAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAAAACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACTGATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCGTGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTTAGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAAATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTC]
[+] EMBL BM643603 [CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGTAAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAAAACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACTGATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCGTGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTTAGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTG ]
[+] EMBL BM596718 [ ccgATGAATAATAAGTAACGAAAACGAAATTAGCAGATTGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTTTGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAAATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTC]
consensusID : consensus_5709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 900 fasta sequence
[CCGCCCACGCGTCCGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCATTGAAAAACAAAAAAAAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAAACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAACGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTGGGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAATAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA]
[+] EMBL BM597656 [CCGCCCACGCGTCCGTAATAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCATTGAAAAACAAAAAAAAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAATCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAAACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGAAACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTGTTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAA ]
[+] EMBL BM597491 [ ccgGAATTAAAAAAAACTATCTTCATTTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAAGACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCCGAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTATTTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATATTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCATACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAACGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTGGGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAATAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5709#0 CCGCGAAGTGGACGAAGGGAAAAAGTTGTTTTTCCACATGTCCGATGTTCAAGGCAACGT 60
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AAATCTCTATCTCGGAGATACGGTGGAGTTTTCCATCGTTACTAATCAGCGGAATGGTAA 120
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AACCTCTGCATGCAACGTTGTTAAAATAAACGATGCGAATGGACCGCGGCCCGAACGACT 180
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 GATTTCCCGCATCAAGCTAAACTCCGTAGACGATAGTGGACCACGTCTAACTGTCATTCG 240
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 TGCACCGAAAGGGCCGGACGGTACGAAAGGCTTCCATGCATCTGCCAGAACTCCTCGTTT 300
consensus_5709#1 ------------------------------------------------------------
consensus_5709#0 AGTTGGTATATATCCAGCAAATGAATAATAAGTAACAAAAACGAAATTAGCAGATTGTAA 360
consensus_5709#1 ------------------------------------------CCGCCCACGCGTCCGTAA 18
* * ****
consensus_5709#0 TAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCTT 420
consensus_5709#1 TAAAATTATACCAATTACTCTTCATTTTTACTCAGTTTCATGTTTGTATTTCGGTTTCAT 78
********************************************************** *
consensus_5709#0 TGAAAAACAAAAAAAAAAAAAAAAACAAAAAAGTTGTGTATGCCTATCCATTTTAGTTAA 480
consensus_5709#1 TGAAAAACAAAAAA--------AAACAAAATAGTTGTGTATGCCTATCCATTTTAGTTAA 130
************** ******** *****************************
consensus_5709#0 TCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCTGGAGGCATACGAA 540
consensus_5709#1 TCAATTGAACGTTTAAAATAATTTGCTGTAAAAAGTAACGCGTTGCAGGAGGCATACGAA 190
********************************************** *************
consensus_5709#0 ATAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGA 600
consensus_5709#1 ACAATAATAAATACAATGCAAAAAGTATCATCAATGGAACATAAACAACACATGTGATGA 250
* **********************************************************
consensus_5709#0 AACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTG 660
consensus_5709#1 AACCAAAACTTTGTTTTCTGGTTACTGCTTGCGAAACGAAGCAAAATACTACGCTTATTG 310
************************************************************
consensus_5709#0 TTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCAT 720
consensus_5709#1 TTGCGTTGATCATTTCGCACTGCCAAACAGGATGTGTGAATTAAAAAAAACTATCTTCAT 370
************************************************************
consensus_5709#0 TTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAA 780
consensus_5709#1 TTAAAAAAAAGAAACACGAAAAGTGTTTGAAACCTTAGTTACAGCCTAATTTACATCGAA 430
************************************************************
consensus_5709#0 GACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCC 840
consensus_5709#1 GACTAATTTTAACATTCATAAACAAACAACAGGATACCTTATCTGGAAACAAATGTGCCC 490
************************************************************
consensus_5709#0 GAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTAT 900
consensus_5709#1 GAAGATTTAACGTATATTTACATTATCCTTATTGTCGGTAGACAATTGATTAGCTATTAT 550
************************************************************
consensus_5709#0 TTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATA 960
consensus_5709#1 TTAGAATTATGGTAAAAAGTACCGGTTCTTCATTTCTGATGTGATGATTTCGTCAGAATA 610
************************************************************
consensus_5709#0 TTCGCAATCGATGTTC-------------------------------------------- 976
consensus_5709#1 TTCGCAATCGATGTTCGCAATTCTTGCGCTAGTCGAAACATTTCATTATATTGAATGCAT 670
****************
consensus_5709#0 ------------------------------------------------------------
consensus_5709#1 ACCGAGGTGTAAAATTGTGTGGACGTTGCGTAAATCGAATAGTTTTGTTTTATTTTCAAA 730
consensus_5709#0 ------------------------------------------------------------
consensus_5709#1 CGATACAATTAACTAATTCAAACTAAAGAATTCTAGTGTCATGTTTTTTTTTTTTATTTG 790
consensus_5709#0 ------------------------------------------------------------
consensus_5709#1 GGCCTTGAATAGTTTTTTTTGTTTTTTTTTTTGTTGGGATTGTATACAAAATTATTAAAA 850
consensus_5709#0 --------------------------------------------------
consensus_5709#1 TAGTAAATATAATTCTAACCGATCACAAACGGTGTGGTGCACAATTATGA 900
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||