cluster # 5722

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Anopheles gambiae
cluster # 5722 cluster # 5722 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5722#0 length = 778 sequences # 1

consensus_5722#1 length = 665 sequences # 2
consensus_5722#2 length = 437 sequences # 1

consensusID : consensus_5722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 778
fasta sequence

                              [GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCGCCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACCAGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACGAACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCTTCATGAATGGGGAGGGGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACACATTTTCCTCTAATTGCCATTGAAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAATAAGACNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCGAGAACAAAGGTTNGCAATTGGGAAGAAANGGCANAGAAGGGCAAAGGTAGGAAGTCAAGTATTGGCTTTAACTGGCCGTTAT]

[+] EMBL BX467190             [GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCGCCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACCAGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACGAACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCTTCATGAATGGGGAGGGGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACACATTTTCCTCTAATTGCCATTGAAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAATAAGACNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCGAGAACAAAGGTTNGCAATTGGGAAGAAANGGCANAGAAGGGCAAAGGTAGGAAGTCAAGTATTGGCTTTAACTGGCCGTTAT]




>consensus_5722#0
GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCG
CCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACC
AGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACG
AACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCT
TCATGAATGGGGAGGGGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGA
CTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTG
GTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAG
CCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTA
AGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGACAAAT
AAACTCGTTAGCCTAAACGATTGCTGAAAACACATTTTCCTCTAATTGCCATTGAAATAG
TAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAATAAGACNATTAT
CCGAAATCCCACGCATTTAAAATCCGATACCGTTCGAGAACAAAGGTTNGCAATTGGGAA
GAAANGGCANAGAAGGGCAAAGGTAGGAAGTCAAGTATTGGCTTTAACTGGCCGTTAT

consensusID : consensus_5722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [CCGCGGACGCGTGGGAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACATAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATACACACTCATTAAAAAAAGAAAGAGAAGAG---AAAAAACTACTGAACGATCTGTGAAAAGAAAAAAA-AAAGTTCTAATTCATACTCTACAGAATCG-CCCGACACGGAAACACATAATGCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT]

[+] EMBL BM598516             [CCGCGGACGCGTGGGAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACATAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATACACACTCATTAAAAAAAGAAAGAGAAGAG   AAAAAACTACTGAACGATCTGTGAAAAGAAAAAAA AAAGTTCTAATTCATACTCTACAGAATCG CCCGACACGGAAACACATAATGCATGCTACAATAA                                ]
[-] EMBL BM657093             [                                                                                                                                                                                                                                                                                                                                          AAGCGATTCAAATAGGAAGGAAAGGAAATAAACCATTATCGAATCCCCATAAGATTGATCGGCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAGCACATCCCCACTCATTAAAAAAAGAAAGAGAAGAGAAAAAAAAACTACTGAACGATCTGTGAAAAGAAAAAAATAATGTTCTAATTCATACTCTACAGAATCGCCCCGATACGGAAACACATAATGCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT]




>consensus_5722#1
CCGCGGACGCGTGGGAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGC
TTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTG
TATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAA
CAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAACACCGTACGGAAATACAGAAC
GCCTCACACAAATAAACAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAAC
ATTTTCCTCTAATGCCATTGAATAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATA
AAACATTATCGAATCCACATAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGA
AGGAAAAGTAGGAAGTAAGTTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAA
GAGGATATGAGAAGTAGAGCACATACACACTCATTAAAAAAAGAAAGAGAAGAGAAAAAA
CTACTGAACGATCTGTGAAAAGAAAAAAAAAAGTTCTAATTCATACTCTACAGAATCGCC
CGACACGGAAACACATAATGCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAA
ATTAT

consensusID : consensus_5722#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [CTGCAGAATCGNCCACGAGGTGGTGGCTTCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAACAAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTNGAGAAGCGATTCAANATAGGAAGGAAAGGAAATAAAACATTATCGA]

[+] EMBL BX469750             [CTGCAGAATCGNCCACGAGGTGGTGGCTTCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAACAAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAATGCCATTGAATAGTNGAGAAGCGATTCAANATAGGAAGGAAAGGAAATAAAACATTATCGA]




>consensus_5722#2
CTGCAGAATCGNCCACGAGGTGGTGGCTTCATGAATGGGGAGGGGCGGGGAAAATACAGG
TTTAAATCCTGATACGCTAAAGGAAATCGACTTATGTAGTTAGTAGTTCTCGTCATTTTG
TGCTTGAACTAGTTTAAAAGCAAGAAACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCAT
TTGTATCTGTTATTAATAATAATAGTGCAGTCAGCTACACTACTGAAAGAAAATAACACA
AAACAGTAATTGAAATCAACAGTACTACTAAGCATGATGAAAGCACCGTACGGAAATACA
GAACGCCTCACACAAATAACAAAAACAAATAAACTCGTTAGCCTAAACGATTGCTGAAAA
CAACATTTTCCTCTAATGCCATTGAATAGTNGAGAAGCGATTCAANATAGGAAGGAAAGG
AAATAAAACATTATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5722#0      GAGGCAGAATCGGCAGGTTGAAGACACCCCAGCCACCACTCCACCACAGTATTAACCTCG 60
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      ------------------------------------------------------------
                                                                                  

consensus_5722#0      CCGAATACTGTGCACAAAAAAGATCGCACAGGCCGCCCCGGTGATGGACAGTCCTGCACC 120
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      ------------------------------------------------------------
                                                                                  

consensus_5722#0      AGTTAGCAAAAGGAGAAATGACACATCTGAAGCATATAATACACAATGCGTAGTGAAACG 180
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      ------------------------------------------------------------
                                                                                  

consensus_5722#0      AACATGGGTTGTACGGTGTGGGGAAATGATAGAAAGCCATAAGCGCAGGATGTGGTGGCT 240
consensus_5722#2      ----------------------------CTGCAGAATC----GNCCACGAGGTGGTGGCT 28
consensus_5722#1      ------------------------------------------------------------
                                                                                  

consensus_5722#0      TCATGAATGGGGAGGGG--GGGAAAATACAGGTTTAAATCCTGATACGCT--AAAGGAAA 296
consensus_5722#2      TCATGAATGGGGAGGGGCGGGGAAAATACAGGTTTAAATCCTGATACGCT--AAAGGAAA 86
consensus_5722#1      -------------------------------------CCGCGGACGCGTGGGAAAGGAAA 23
                                                              * **  **    ********

consensus_5722#0      TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 356
consensus_5722#2      TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 146
consensus_5722#1      TCGACTTATGTAGTTAGTAGTTCTCGTCATTTTGTGCTTGAACTAGTTTAAAAGCAAGAA 83
                      ************************************************************

consensus_5722#0      ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 416
consensus_5722#2      ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 206
consensus_5722#1      ACTGGTGTTGGAGCGTCGCGTCTGAAGGAACCATTTGTATCTGTTATTAATAATAATAGT 143
                      ************************************************************

consensus_5722#0      GCAGCCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 476
consensus_5722#2      GCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 266
consensus_5722#1      GCAGTCAGCTACACTACTGAAAGAAAATAACACAAAACAGTAATTGAAATCAACAGTACT 203
                      **** *******************************************************

consensus_5722#0      ACTAAGCATGATGAAA-CACCGTACGGAAATACAGAACGCCTCACACAAATNAACAAAGA 535
consensus_5722#2      ACTAAGCATGATGAAAGCACCGTACGGAAATACAGAACGCCTCACACAAATAA-CAAAAA 325
consensus_5722#1      ACTAAGCATGATGAAA-CACCGTACGGAAATACAGAACGCCTCACACAAATAAACAAA-A 261
                      **************** ********************************** * **** *

consensus_5722#0      CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACA-CATTTTCCTCTAATTGCCATTG 594
consensus_5722#2      CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAAT-GCCATTG 384
consensus_5722#1      CAAATAAACTCGTTAGCCTAAACGATTGCTGAAAACAACATTTTCCTCTAAT-GCCATTG 320
                      ************************************* ************** *******

consensus_5722#0      AAATAGTAGAGNNAAAGCGGAATTTCAAAATTACGGAAGGGGAAAACGGAANAAT----- 649
consensus_5722#2      AA----TAGTNGAGAAGCGA---TTCAANAT------AGGAAGGAAAGGAAATAA----- 426
consensus_5722#1      AA-TAGTAGAGAAGCGATTCAAATAGGAAGGAAAGGAAATAAAACATTATCGAATCCACA 379
                      **    ***              *   *         *       *       *      

consensus_5722#0      -AAGA-CNATTATCCGAAATCCCACGCATTTAAAATCCGATACCGTTCG--AGAACAAAG 705
consensus_5722#2      -AACA-TTATCGA----------------------------------------------- 437
consensus_5722#1      TAAGATCGATCGTCGAGAAGAGTTGGAATGGAGAAGGCAGAAGGAAAAGTAGGAAGTAAG 439
                       ** *   **                                                  

consensus_5722#0      GTTNGCAATTGGGAAGAAANGGCANAG--AAGGGCAAAGGTAGGAAGTCAAGTATTGGCT 763
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      TTTGCTTACTGCCGTTACTAGTCATAATCAATGGCAAAGAAGAGGATATGAGAAGTAGAG 499
                                                                                  

consensus_5722#0      TTAACTGGCCGTTAT--------------------------------------------- 778
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      CACATACACACTCATTAAAAAAAGAAAGAGAAGAGAAAAAACTACTGAACGATCTGTGAA 559
                                                                                  

consensus_5722#0      ------------------------------------------------------------
consensus_5722#2      ------------------------------------------------------------
consensus_5722#1      AAGAAAAAAAAAAGTTCTAATTCATACTCTACAGAATCGCCCGACACGGAAACACATAAT 619
                                                                                  

consensus_5722#0      ----------------------------------------------
consensus_5722#2      ----------------------------------------------
consensus_5722#1      GCATGCTACAATAAAATGTGAAGAAATATAAATATGTTTAAATTAT 665