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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1655 fasta sequence
[GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA-TAAGGTATTGTAGAACAA-TTTTCTCTTA-GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC]
[+] EMBL BX468105 [GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGACTAAGGTATTGTAGAACAA TTTTCTCTTAGGCTTACTCACATA ]
[+] EMBL BX628528 [ AAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA TAAGGTATTGTAGAACAATTTTTCTCTTA GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAG ]
[+] EMBL BM601526 [ ccgTGGCAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAATGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTGCAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC]
consensusID : consensus_5737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA]
[+] EMBL BM602709 [CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5737#0 GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAA 60
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 CAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTT 120
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCA 180
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 AAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGA 240
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTT 300
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGT 360
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 GTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCA 420
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 GCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAA 480
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 AAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCT 540
consensus_5737#1 ----------------------------------------CCGGTGAAAGACGAAGCGAT 20
**** ** ** * *
consensus_5737#0 -AGGAG-AGAAAATTCAAAAAATCGTACTGAAGTTATATTGATAAGGTATTGTAGAACAA 598
consensus_5737#1 CAGGAGTAGGGCGTTAGGAAAATTTTG--GAACCCGCGCGGA-AGGGTGCGTTATTGCGC 77
***** ** ** ***** * *** ** * *** ** *
consensus_5737#0 TTTTCTCTTAGCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCAC 658
consensus_5737#1 CCGCCCCGGCTCCTGTGCAACTGAATAGT-CTGATTTCTTTAGTTAATATAGCCTGTCCG 136
* * * * ** * ** * * * * ** * ** ** *
consensus_5737#0 ACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGG 718
consensus_5737#1 AATAGAGAATGA------GAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAAC 190
* * * *** **** * * ** * **** * * **
consensus_5737#0 GTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAA 778
consensus_5737#1 GCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCAC------------CAA 238
* * * * * **** **** * * ** ** **
consensus_5737#0 AACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCT 838
consensus_5737#1 AACACGAACAGAACAGA-ATCTCTTCTCTTTGTT--TCTCTCTTTCGATTAGGGTTG-CT 294
***** * ***** * * * * * * * * * * * *** **** **
consensus_5737#0 TTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAAC 898
consensus_5737#1 TAACGTGT------ATGTGTTTTAC-CTTTTGTTTTTTATTTTTCCGTTCTATTTCTAAC 347
* * *** ** * ** * ** ***** ** * * * * * * ****
consensus_5737#0 TGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAA 958
consensus_5737#1 TGTCCTTTCCTTAGAGTAAGT------GACTAAGTATACCTTTC-CTTC--ATCCGGTAC 398
*** *** *** * * ** ** ** * * * * **** * ***
consensus_5737#0 TAGTTAATTGAAG---CGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACA 1015
consensus_5737#1 TTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGT 458
* * * **** * **** * * * * * * * * ***
consensus_5737#0 AAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGA 1075
consensus_5737#1 GTGACGAAATCAAGGAAACGAAAAAT-------AGATTCCACGTTTTAGGG-------AA 504
* * * * * *** * **** ** ** ** *
consensus_5737#0 TATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAA 1135
consensus_5737#1 AAAACAACCACCAAAT-TCTTAGCCCAGTA------------------------------ 533
* * * * ** * ** ** * *
consensus_5737#0 ACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATG 1195
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACA 1255
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 CAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAA 1315
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATAT 1375
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 GAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGA 1435
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 GAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATA 1495
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 TACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCG 1555
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 AACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATA 1615
consensus_5737#1 ------------------------------------------------------------
consensus_5737#0 ACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC 1655
consensus_5737#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||