cluster # 5747

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Anopheles gambiae
cluster # 5747 cluster # 5747 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5747#0 length = 859 sequences # 3

consensus_5747#1 length = 266 sequences # 1

consensusID : consensus_5747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 859
fasta sequence

                              [CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTGTGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATAGGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG-AACTTCCCGTACCTGCACGGCTTCTGGCACATTCTCATCTTCATCTCCG-CCTA-TCCGGCCT-GCGTACT-GTTTGCCTACTTCTTCGTCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTCGAGCTCGGCATACCGTACGTGTCGATCAA]

[+] EMBL BM602328             [CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTGTGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGTTGACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTTCCGAGAATTTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATGAAACTTCCCGTACCTGCAC                                                                                                                                                                ]
[+] EMBL BX623644             [                                                             GTATG  TTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATAGGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG AACTTCCCGTACCTGCACGGCTTCTGGCACATTCTCATCTTCATCTCCG CCTA TCCGGCCT GCGTACT GTTTGCCTACTTCTTCGTCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTCGAGCTCGGCATACCGTACGTGTCGATCAA]
[+] EMBL BX620332             [                                                                      GCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGNCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATANGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG AACTTCCCGTACCTGCACGGGTTCTGGCANATTCTCATCTTCATCTCCGCCCTATTCCGGCCTGGCGTACTGGTTTGC                                                                                                    ]




>consensus_5747#0
CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTG
TGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGT
GGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGAT
CAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGG
CCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTC
GTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCAT
ACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAAT
CTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAAC
GGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCC
AGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATAGGCT
GGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCAT
GTTCTGCGACACCTGGTCGCGGATGAACTTCCCGTACCTGCACGGCTTCTGGCACATTCT
CATCTTCATCTCCGCCTATCCGGCCTGCGTACTGTTTGCCTACTTCTTCGTCAACGACGA
GCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTCGAGCTCGGCA
TACCGTACGTGTCGATCAA

consensusID : consensus_5747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [GAGAATCCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCCATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAGCGATCGGCATGTNCTGCGAG]

[+] EMBL BX469327             [GAGAATCCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCCATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAGCGATCGGCATGTNCTGCGAG]




>consensus_5747#1
GAGAATCCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCA
TCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTC
TAGCCCATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGC
GCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATG
GATTAGCGATCGGCATGTNCTGCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5747#0      CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTG 60
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      TGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGT 120
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      GGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGAT 180
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      CAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGG 240
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      CCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTC 300
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      GTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCAT 360
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      ACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAAT 420
consensus_5747#1      ------------------------------------------------------GAGAAT 6
                                                                            * ****

consensus_5747#0      CTTCAAACG----TTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGG 476
consensus_5747#1      CCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGG 66
                      * ** * *     *  ** **   ** **************** ************* **

consensus_5747#0      CAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCC- 535
consensus_5747#1      CAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCC 126
                      *********************************************************** 

consensus_5747#0      ATCCCAG-CCACCTACCTG-CTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGT 593
consensus_5747#1      ATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGT 186
                      **** ** *********** ****************************************

consensus_5747#0      ATAGGCTGGGCGTCCGCAATACCACCATCCTGA-TCATGGCCATCGTTTGC-TGGATTAA 651
consensus_5747#1      ATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAG 246
                      ** **************** ************* ***************** ******* 

consensus_5747#0      CGATCG-CATGTTCTGCGACACCTGGTCGCGGATGAACTTCCCGTACCTGCACGGCTTCT 710
consensus_5747#1      CGATCGGCATGTNCTGCGAG---------------------------------------- 266
                      ****** ***** ******                                         

consensus_5747#0      GGCACATTCTCATCTTCATCTCCGCCTATCCGGCCTGCGTACTGTTTGCCTACTTCTTCG 770
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      TCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTC 830
consensus_5747#1      ------------------------------------------------------------
                                                                                  

consensus_5747#0      GAGCTCGGCATACCGTACGTGTCGATCAA 859
consensus_5747#1      -----------------------------