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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGGGCAAATGCCGTATATGATGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAAGTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAAATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACACCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT]
[+] EMBL BM621346 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGGGCAAATGCCGTATATGATGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAAGTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAAATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACACCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT]
consensusID : consensus_575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTTTTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACTGAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGCATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCA]
[+] EMBL BM634775 [CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTTTTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACTGAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGCATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGTATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTTTACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCTAAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCAAACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAGGTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTACGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCAAAACTATAAACAAACATGATATAAACGGTGGTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_575#0 ------------------------------------------------------------
consensus_575#1 CCGGATCGTTACGATTGATACTAGAACCCAATGGACCAAGATGATACTAACAGAAAAGTT 60
consensus_575#0 ------------------------------------------------------------
consensus_575#1 TTAAGAATCAGCATAGGAAATTGTTTCTGTTTTATATACATACATATCTATATGTATACT 120
consensus_575#0 ------------------------------------------------------------
consensus_575#1 GAATGAAGACAACCAATAGTCAGCTAAAGGAAACACTATATTTATCTATAAAACCGAGGC 180
consensus_575#0 ----CCGCCC-ACGCGTCCGCCCACGCGTCCGGTTAAAAGTTGAGCGTCACTTTTAAGGT 55
consensus_575#1 ATGATGGCAGGAAAAGTCAATGAGCCGGAACTGTTAAAAGTTGAGCGTCACTTTTAAGGT 240
** * *** * * * ****************************
consensus_575#0 ATCGCGTAGTCAGGTATATGTGGCAGAGTTAGATAAGCGTTCTCGAATCAACAAAGGTTT 115
consensus_575#1 ATCGCGTAGTCAGGTATATGTGGCAGAGTTAGGTAAGCGTTCTCGAATCAACAAAGGTTT 300
******************************** ***************************
consensus_575#0 TACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCT 175
consensus_575#1 TACAAACATTATCCCATGGAAAGGAAGTGTTCTCTTTACGATAGTACCGTGCAAGTATCT 360
************************************************************
consensus_575#0 AAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCA 235
consensus_575#1 AAATCACCGACACACCACACCCTCTAGAATGGAATGCGTTGTCGTGTTCGCGTGGTTGCA 420
************************************************************
consensus_575#0 AACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAG 295
consensus_575#1 AACAAATGCACACGACATAATATAAACAAAACAAAACAACAACAAAAAACATACAGAAAG 480
************************************************************
consensus_575#0 GTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTA 355
consensus_575#1 GTCAATTTAATTAGTCCATCTATAACGCGCACCCATTCGTAGCCTTCCAACCTCCCCTTA 540
************************************************************
consensus_575#0 CGTGATAATGTGGGCAAATGCCGTATATGAT----GGCACAGCAACACAACAACAAAGCA 411
consensus_575#1 CGTGATAATGTGTGCAAATGCCGTATATGATATACGGCACAGCAACACAACAACAAAGCA 600
************ ****************** *************************
consensus_575#0 AAACTATAAACAAACATGATATAAACGGTGGTGCACACTATTGTTAACATTTACGACAAA 471
consensus_575#1 AAACTATAAACAAACATGATATAAACGGTGGTGCA------------------------- 635
***********************************
consensus_575#0 GTTTACTCGTACTTGCACGCAAGATAGGTAGCCTCCCAACCCGCAAAACCGTCTTTCGAA 531
consensus_575#1 ------------------------------------------------------------
consensus_575#0 ATTCGAAATACCATGTTTTCCCACCCCCCGTAGCGTTAATCTCCCTCTGTTACTCATACA 591
consensus_575#1 ------------------------------------------------------------
consensus_575#0 CCACACCACGTCGTACACCAACTAACAAACGGGTCCACGATTTT 635
consensus_575#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||