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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence
[GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCAAAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTAAGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTCCTCCTTTCCCCCACACACAAACACACGTGCGTACCACCCACCGCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCTGTCTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAACAACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACACTCTCTTCCAACCCCTCAATCANAACTACAACAGACGAAACCGTCTTCTTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACACTTTNTAGCCCATTCCCACGTTTTANCCCAGGGTCACATCNACGCACACCTTTAAACCCCGCNTAATTCGCGATACCTTTTAACCCCGGTTCGTANTCCATTTCCAAACTCCACTTTTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATACACTCGGTCGCTATCCTANTC]
[+] EMBL BX467179 [GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCAAAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTAAGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTCCTCCTTTCCCCCACACACAAACACACGTGCGTACCACCCACCGCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCTGTCTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAACAACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACACTCTCTTCCAACCCCTCAATCANAACTACAACAGACGAAACCGTCTTCTTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACACTTTNTAGCCCATTCCCACGTTTTANCCCAGGGTCACATCNACGCACACCTTTAAACCCCGCNTAATTCGCGATACCTTTTAACCCCGGTTCGTANTCCATTTCCAAACTCCACTTTTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATACACTCGGTCGCTATCCTANTC]
consensusID : consensus_5790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTTTCCCCCCACACAAACACACGTGCGTACCACCCCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACACGTCCATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCTGTCAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTGTTTCGAGATCAGCAAACAACGCACTGGAAGCGAGGCTGTGTGTTTAGTAGGATCCAACCTTCCAAGTACACTCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGACTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCATTTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATACAGCTTAACGCAACGAACGATAATGGCATCGTGGAAAGCAACCCAAAACTTCTTACTCCTCCCTTAGCCTTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTTGGTAAAGGGTGTACTGGGTTGGT]
[+] EMBL BM629371 [CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTTTCCCCCCACACAAACACACGTGCGTACCACCCCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACACGTCCATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCTGTCAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTGTTTCGAGATCAGCAAACAACGCACTGGAAGCGAGGCTGTGTGTTTAGTAGGATCCAACCTTCCAAGTACACTCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGACTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCATTTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATACAGCTTAACGCAACGAACGATAATGGCATCGTGGAAAGCAACCCAAAACTTCTTACTCCTCCCTTAGCCTTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTTGGTAAAGGGTGTACTGGGTTGGT]
consensusID : consensus_5790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCGGATCATCGAATCGGTTGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTGTTCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATGACGACACGGACAAGCACCACATCCAGTTTGTGAAGGCTAACGATGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAACAATAAGCTACCGAAGCCGAAACTTCGCAAACGCTACACCGACGGTGTGGAAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAAGCTGAAGCCCATTCCGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGTGCAGGCACCTCCGGCAAGGACTCCGGCAAGAGCAAGACGACCAAGTCCGCTCCGGCCCCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCCTCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG]
[+] EMBL BM607452 [CCGGATCATCGAATCGGTTGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTGTTCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATGACGACACGGACAAGCACCACATCCAGTTTGTGAAGGCTAACGATGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAACAATAAGCTACCGAAGCCGAAACTTCGCAAACGCTACACCGACGGTGTGGAAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAAGCTGAAGCCCATTCCGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGTGCAGGCACCTCCGGCAAGGACTCCGGCAAGAGCAAGACGACCAAGTCCGCTCCGGCCCCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCCTCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG]
consensusID : consensus_5790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[GGTGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAATGACGAATGTTTCTACGTTGGACTGGGACACGCCGGTCGTGTAACAAAGCGGGACAAAAAATCCACCGCCAAGGAGGACGACTCGTTCCGGTGTTGCCCGGCGAAGGTCGAGAAGAACACCCGCGTAACGCAGATGGCAGCGCAGAAGATCAGCCGCCGGGACAGTGACGAGGCGGAGAGCCAGTTCGCCTTCCGGCAGAAGAAGCTGTCGGACGTAGCGGACGCGACGGCGGCCGCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGCCAGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGGGGGGCAAAGGTANNAAGGACGCCNAAGACGACGACGGTGACGATGACGATGATGGACTGTTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA]
[+] EMBL BX619212 [GGTGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAATGACGAATGTTTCTACGTTGGACTGGGACACGCCGGTCGTGTAACAAAGCGGGACAAAAAATCCACCGCCAAGGAGGACGACTCGTTCCGGTGTTGCCCGGCGAAGGTCGAGAAGAACACCCGCGTAACGCAGATGGCAGCGCAGAAGATCAGCCGCCGGGACAGTGACGAGGCGGAGAGCCAGTTCGCCTTCCGGCAGAAGAAGCTGTCGGACGTAGCGGACGCGACGGCGGCCGCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGCCAGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGGGGGGCAAAGGTANNAAGGACGCCNAAGACGACGACGGTGACGATGACGATGATGGACTGTTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5790#0 GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCA 60
consensus_5790#1 ------------------------------------------------------------
consensus_5790#3 ------------------------------------------------------------
consensus_5790#2 ------------------------------------------------------------
consensus_5790#0 AAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTA 120
consensus_5790#1 ------------------------------------------------------------
consensus_5790#3 ------------------------------------------------------------
consensus_5790#2 ------------------------------------------------------------
consensus_5790#0 AGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTG- 179
consensus_5790#1 --CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTG- 57
consensus_5790#3 ---------------------------------GGTGAGAAGCTGGCCCACGAGATCGG- 26
consensus_5790#2 ------------------------------------------CCGGATCATCGAATCGGT 18
** * * *
consensus_5790#0 -TACCTCCTCCTCCTCCTTTCCCCCACACACAAAC--ACACGTGCGTACCACCCACCGCT 236
consensus_5790#1 -TACCTCCTCCT-------TTCCCCCCACACAAAC--ACACGTGCGTACCACCC----CT 103
consensus_5790#3 -AATCTTCTCGT--TCCCGGCCCTGGTATATTACG--AAACCGGTGTCCCGATTA----- 76
consensus_5790#2 TGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTG----T 74
* * * * * ** *
consensus_5790#0 TGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTC-GGACCTTCGGCT 295
consensus_5790#1 TGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTC-GGACCTTCGGCT 162
consensus_5790#3 TGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCT--AATTGATCACAA 134
consensus_5790#2 TCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATG 134
* * * * * * **
consensus_5790#0 GGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGT 355
consensus_5790#1 GGAGGGAACACGTC-CATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAA--TCCCCGT 219
consensus_5790#3 AAATGACGAATGTT-TCTACGTTGGACTGGG-ACACGCCGGTCGT--GTAA-----CAAA 185
consensus_5790#2 ACGACACGGACAAGCACCACATCCAGTT-TGTGAAGGCTAACGATGAGAAGCTGGCCCAC 193
* * * * * * * *
consensus_5790#0 CAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCT-GT 414
consensus_5790#1 CAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCT-GT 278
consensus_5790#3 GCGGGACAAAAAATCC-----ACCGCCAAG--GAGGACGACTCGTTCCGGTGTTGCC-CG 237
consensus_5790#2 GAGATCGGAATCTTCTCGTTCCCGGCCCTG--GTATATTACG-AAACCGGTGTCCCGATT 250
* ** ** ** * * * ** *
consensus_5790#0 CTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAAC 474
consensus_5790#1 CAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTT-GTTTCGAGATC--AGCAAAC 335
consensus_5790#3 GCGAAGGTCGAGAAGAACACCC--GCGTAACGCAGATGGCAGCGCAGAAG---ATCAGCC 292
consensus_5790#2 ATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAA 310
* * ** ** * *
consensus_5790#0 AACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACAC 534
consensus_5790#1 AACGCACTGGAAGCGAGGCTGTGTGTTT-----AGTAGGATCCAACCTTCCAAG-TACAC 389
consensus_5790#3 GCCGGGACAGTGACGAGGCGGAGAGCCA-----------GTTCG-CCTTCCGGCAGAAG- 339
consensus_5790#2 AACAATAAGCTACCGAAGCCGAAACTTC---------GCAAACGCTACACCGACGGTGTG 361
* *** ** * * **
consensus_5790#0 TCTCTTCCAACCCCTCAATCANAA--------------------------CTACAACAGA 568
consensus_5790#1 TCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGA 449
consensus_5790#3 --------AAGCTGTCGGACGTAG--------------------------------CGGA 359
consensus_5790#2 G-------AAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAA 414
** ** *
consensus_5790#0 CGAAACCGTCTTC---TTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACAC 625
consensus_5790#1 CTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCAT 509
consensus_5790#3 CGCGACGGCGGCC--------------GCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGC 405
consensus_5790#2 GCTGAAGCCCATTC--CGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGT 472
* *
consensus_5790#0 TTTN-TAGCCCATTCCCAC-GTTTTANCCCAGGGTCACATCN-ACGCA-CACCTTTAAAC 681
consensus_5790#1 TTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATA-CAGCTTAACGC 568
consensus_5790#3 C--AGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGG 463
consensus_5790#2 GCAGGCACCTCCGGC--AAGGACTCCGGCAAGAGCAAGA-CGACCAAGTCCGCTCCGGCC 529
* * * * * * *
consensus_5790#0 CCCGCNTAATTCGCGATACCTTTTAACCCCG-GTTCGTANTCCATTTCCAAACTCCACTT 740
consensus_5790#1 AACGAACGATA-ATGGCATCGTGGAAAGCAA-CCCAAAACTTCTTACTCCTCCCTTAGCC 626
consensus_5790#3 GGGGCAAAGGTANNAAGGACGCCNAAGACGA-CGACGGTGACGATGACGATGATGGACTG 522
consensus_5790#2 CCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCC 589
* *
consensus_5790#0 TTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATA---CACTC 797
consensus_5790#1 TTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTT 686
consensus_5790#3 TTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA----------------------------- 553
consensus_5790#2 TCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG-------------------- 629
* *
consensus_5790#0 GGTCGCTATCCTANTC------- 813
consensus_5790#1 GGTAAAGGGTGTACTGGGTTGGT 709
consensus_5790#3 -----------------------
consensus_5790#2 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||