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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence
[CCGCGAAAGCATTCCGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCGAGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCCACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTGCGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCGACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATAATGGGTTCGCCATCGGACCGGACGCTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCTACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATGGAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGCGGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCGGCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACCGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACATCGGAAACGTTC]
[+] EMBL BM614018 [CCGCGAAAGCATTCCGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCGAGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCCACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTGCGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCGACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATAATGGGTTCGCCATCGGACCGGACGCTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCTACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATGGAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGCGGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCGGCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACC ]
[+] EMBL BM607822 [ ccgACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACCGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACATCGGAAACGTTC]
consensusID : consensus_5791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence
[GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGGAAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGCGGATGCGCAAGGGCCCGTNTCGCAAGAAGCTTAAGAAACTCCGACAAAGAGCTGTCGGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGATATTGGAGGATAGGTAAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGGGGCCACGGTGCCGGACCCGGGCTGGCGCGGCGTTCCGGGCCGGCNGGGTTGGCCCCAGTGCAGCCGAGGGTANTAAC]
[+] EMBL BX469797 [GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGGAAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGCGGATGCGCAAGGGCCCGTNTCGCAAGAAGCTTAAGAAACTCCGACAAAGAGCTGTCGGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGATATTGGAGGATAGGTAAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGGGGCCACGGTGCCGGACCCGGGCTGGCGCGGCGTTCCGGGCCGGCNGGGTTGGCCCCAGTGCAGCCGAGGGTANTAAC]
consensusID : consensus_5791#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[TGTGTGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGCGGATGCGCAAGGGCCCGTTCCGCAAGAAGCTTAAAAACTCCGACAAAGAGCTGTCGGCGAACAGCTTCAACTCGGTCNATCTGTCCATCGCCATACAAGAGATTGGAGATAGCAAGATAGAGGTGATCGGGCTGGAGAACTGCCTGCACNTGGGCCAGGTGCGGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGTGCANCGAGGTAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGGGCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGTCGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA]
[+] EMBL BX621974 [TGTGTGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGCGGATGCGCAAGGGCCCGTTCCGCAAGAAGCTTAAAAACTCCGACAAAGAGCTGTCGGCGAACAGCTTCAACTCGGTCNATCTGTCCATCGCCATACAAGAGATTGGAGATAGCAAGATAGAGGTGATCGGGCTGGAGAACTGCCTGCACNTGGGCCAGGTGCGGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGTGCANCGAGGTAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGGGCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGTCGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5791#1 GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAG 60
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 ----------------------------------------------CCGCGAAAGCATTC 14
consensus_5791#1 CAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTT 120
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 CGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCG 74
consensus_5791#1 GATAAAACCGCAGGTCGG-ATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACT 179
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 AGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCC 134
consensus_5791#1 TTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATC 239
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 ACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTG 194
consensus_5791#1 CGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGG 299
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 CGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCG 254
consensus_5791#1 AAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGT- 358
consensus_5791#2 ------------------------------------------------TGTGTGATGGT- 11
consensus_5791#0 ACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATA 314
** * ** *
consensus_5791#1 ---GTTTCGC--TCGAGTTGGCCAACGGTCCACA-GCTGCAGGGCATCGC----GTTGCT 408
consensus_5791#2 ---GTTTCGC--TCGAGTTGGCCAACGGTCCACA-GCTGCAGGGCATCGC----GTTGCT 61
consensus_5791#0 ATGGGTTCGCCATCGGACCGGACG-CTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCT 373
* ***** *** ** * * * * ** * * ** * *** ***
consensus_5791#1 GAACATCC-CCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGC 467
consensus_5791#2 GAACATCC-CCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGC 120
consensus_5791#0 ACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATG 433
* ** ** **** ** * * ** ** * * ** **
consensus_5791#1 GGATGCGCAAGGGCC---CGTNTCGCAAGAAGCTTAAG-AAACTCCGACAAAGAGCTGTC 523
consensus_5791#2 GGATGCGCAAGGGCC---CGTTCCGCAAGAAGCTTAA--AAACTCCGACAAAGAGCTGTC 175
consensus_5791#0 GAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGC 493
* * * * *** * * * *** ** * * * * ** *
consensus_5791#1 GGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGA-TAT-TGGAG 581
consensus_5791#2 GG-CGAACAGCTTCAACTCGGTCNATCTG-TCCATCGCC--ATACAA-GA-GAT-TGGAG 228
consensus_5791#0 GGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCG 553
** ** * * *** *** *** * ** * ** * *** *
consensus_5791#1 GATAGGT--AAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGG-GG 638
consensus_5791#2 -ATAGC----AAGATAGAG---GTGATC--GGGCTGGAGAACTGCCT-GCACNT--G-GG 274
consensus_5791#0 GCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCC-GTGTGCGAACGA 612
** ** * * * * * * ** *** *** * *
consensus_5791#1 CCACGGTGCCGGACCCGGGCTGGCGCGGC--GTTCCGGGCCGGCNGGGTTGGCCCCAGTG 696
consensus_5791#2 CCA-GGTGC-GGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGT--GCANCGAGG 330
consensus_5791#0 CGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCA--G 670
* * * *** * * * * * * * ** * *
consensus_5791#1 CAGCCGAGGGTANTAAC------------------------------------------- 713
consensus_5791#2 TAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGG 390
consensus_5791#0 CAGCAAC-ACCATCACAGCAACGGCAACGCCACGGACAAACCGAGA-CCGGAGAAGAAAA 728
* * *
consensus_5791#1 ------------------------------------------------------------
consensus_5791#2 GCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGT 450
consensus_5791#0 TTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACA 788
consensus_5791#1 ------------------------------------------------------------
consensus_5791#2 CGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA------------------------ 486
consensus_5791#0 ACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACC 848
consensus_5791#1 ------------------------------------------------------------
consensus_5791#2 ------------------------------------------------------------
consensus_5791#0 TGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACT 908
consensus_5791#1 --------------------------
consensus_5791#2 --------------------------
consensus_5791#0 TTGAGTACGCCACATCGGAAACGTTC 934
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||