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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1104 fasta sequence
[CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGGAAATTTCTACACTTTGCGTAATGTTTCGTGGTA-ATCGC-TTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTTTTTCACGACAATAATATAGAACTAAGGATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTGCAG]
[+] EMBL BM656248 [CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGGAAATTTCTACACTTTGCGTAATGTTTCGTGGTACATCGCATTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACATCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACCAATATTATACATTACCG ]
[+] EMBL CNS08RVF [ TTCGTGGTA ATCGC TTGGGAGGTGTATTAATCGGTGCCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGTACTGTCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGCACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTT ]
[-] EMBL CNS08RVG [ CGGTTGGACTACCCGCTGCGGCACTTTTTCCCCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGGATGAGAACGACTTTGTTGAACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCTGCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCCCCCGAAAGTAATTCACGATTTTATCGGCTGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTTGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAGTTAAAAAACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTCTTATTTATGCTATACTTTGTACGTCGTGTAGAGTGTATCATTGATTGGCAATGAAAACAGAATGCAAAATGACAATCGGCATGGAATGTGATACACGAAACCGTCTTTATGGCCATTCCAAAAAATGAATGTAATTTTTTCACGACAATAATATAGAACTAAGGATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTGCAG]
consensusID : consensus_5798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence
[GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGCTGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAAACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATACGTGTCTTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTGAAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGAAAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACCATTATTATTGAACTTAGGGGATCCTAACTGAAGTA]
[+] EMBL BX467821 [GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGGATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTCTACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCTGCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAGCGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCTGGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGCTGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGCATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAGCGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTATGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAAACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATACGTGTCTTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTGAAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGAAAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACCATTATTATTGAACTTAGGGGATCCTAACTGAAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5798#0 CCGCTGCTCAATGCTAACTGGCTACATGATCTGCTTAACCCTGTTCGGTATGATAAATGG 60
consensus_5798#1 ------------------------------------------------------------
consensus_5798#0 AAATTTCTACACTTTGCGTAATGTTTCGTGGTAATCGCTTGGGAGGTGTATTAATCGGTG 120
consensus_5798#1 ------------------------------------------------------------
consensus_5798#0 CCGTACTTAACATTACCTTGCCGATCATACTGATCACCCGCTCGGTCATCTTTGGAACTG 180
consensus_5798#1 ------------------------------------------------------------
consensus_5798#0 TCTTTATTTTCTATGGCGTTAATACAATCGTTGGTGCCCGGTTGGACTACCCGCTGCGGC 240
consensus_5798#1 ------------------------------------------------------------
consensus_5798#0 ACTTTGTCCGCCGACTGTACGTGGAAAACTATGAACGTGTCCATTCTGATCCGGCACTGG 300
consensus_5798#1 -----------------------GGCAAGAATCGGCACGATGGATCTGATCCGGCACTGG 37
* ** ** * * ****************
consensus_5798#0 ATGAGAACGACTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTC 360
consensus_5798#1 ATGAGAACGATTTTGTTGCACTGGCGGCCTTCGCTATCATCATGCTGGTGGCACTGTTTC 97
********** *************************************************
consensus_5798#0 TACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTCGATATCCCCT 420
consensus_5798#1 TACGCTCCCGTTATCAATCGGACGAGGTGCAGGGTGATTATTCGCGCTTTGATATCCCCT 157
************************************************* **********
consensus_5798#0 GCCATCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAG 480
consensus_5798#1 GCCAGCGGGGCCCAGCGAACGGCGACGACGAGGATCGCATAGAAAGGAGTACGGTAATAG 217
**** *******************************************************
consensus_5798#0 CGGCAGACGATACGGCGGCATATCAGCGTTTCATAAACGAACAGCCCATCATCACACGCT 540
consensus_5798#1 CGGCAGACGATACGGCGGCATATCAGCGTTTCGTAAACGAACAACCCATCATCACACGCT 277
******************************** ********** ****************
consensus_5798#0 GGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTATCGGC 600
consensus_5798#1 GGACCAATGGGGACGATGATGTGTTTGAATCTCCCGAAAGTAATTCACGATTTTACCGGC 337
******************************************************* ****
consensus_5798#0 TGCTCAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGC 660
consensus_5798#1 TGCTTAAACGGAACGCTAGAAGATAGAAAACACAAATATTATACATTACCGAAAGATAGC 397
**** *******************************************************
consensus_5798#0 ATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAG 720
consensus_5798#1 ATCACCTGGTAGCTATACAGACTTTACAACCTACAAAACATTACAGGCGGGTAAGAGTAG 457
************************************************************
consensus_5798#0 CGTGTTCGACAGATCTGAATCTAGAACCTTACGCGGATGGAAGTAAGTTCAATAGGTCTA 780
consensus_5798#1 CGTGTTCGACTGATCTGAATCTAGAACCTTACGCTGATGGAAGTAAGTTCAATAGGTCTA 517
********** *********************** *************************
consensus_5798#0 TGCAATTAAATTGTT-TGCGTATTTTTTGCAGAGCAAATGTAAAGCAAGTAG--TTAAAA 837
consensus_5798#1 TGCAATTAAATTGTTGTGCGTATTTTTGCAGAGGCAAATGTAAAGCAAGTAGGTTTAAAA 577
*************** *********** ******************* ******
consensus_5798#0 AACTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATAACGTGTC 897
consensus_5798#1 ACCTGCAACATTGAATCTTATAGGTATAAGCAAAAACTACCAAAACGTAAATA-CGTGTC 636
* *************************************************** ******
consensus_5798#0 TTATTTATGCTATACTTTGTACGTCG----TGTAGAGTGTATCATT-GATTGG-CAATGA 951
consensus_5798#1 TTATTTATGCTATACTTTGTACGTCNGTGGTAAGAGGTGTATCATTTGATTGGGCAACTG 696
************************* * ********** ****** ***
consensus_5798#0 AAA---CAGAATGCAAAA--TG---ACAATC---GGCAT---GGAATGT-GATACACG-- 994
consensus_5798#1 AAAGACCAGAATGCAAAAATTGGACACAATTCGGGGCATTGGNAANTGTTGATACACGGA 756
*** ************ ** ***** ***** * *** ********
consensus_5798#0 AAACCG--TCTTTATGG-CCATTCCAAAAAA--TGAATGTAATTTTTTCACGA------C 1043
consensus_5798#1 AAACCGGTCTTTTATGGGCCATTTCCANAAAATTGGNATTGGTACTTTCGTGCACCGACC 816
****** ******* ***** * * *** ** * * **** * *
consensus_5798#0 AATAATATAGAACTAAGG--ATTCTAACTGAAGTACGGCCAATATACGGTTTGATATTTG 1101
consensus_5798#1 ATTATTATTGAACTTAGGGGATCCTAACTGAAGTA------------------------- 851
* ** *** ***** *** ** ************
consensus_5798#0 CAG 1104
consensus_5798#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||