cluster # 5817

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Anopheles gambiae
cluster # 5817 cluster # 5817 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5817#0 length = 486 sequences # 3

consensus_5817#1 length = 466 sequences # 1

consensusID : consensus_5817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 486
fasta sequence

                              [CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCATGCAGCT]

[+] EMBL BM611624             [CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTA                                             ]
[+] EMBL BM647925             [                            ccgCGTTCAGCTCGCAACATG AAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCATGCAGCT]
[+] EMBL BM653550             [                                                                                                                                                                                                                                                                                                                                                                                           ccgGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTACATTCATGCATGC    ]




>consensus_5817#0
CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCA
TAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAG
AGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCA
AAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACAC
GTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTT
TACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGG
ATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTA
TGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCAT
GCAGCT

consensusID : consensus_5817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [CCGCTCAACGAATACATCGTTCAGCTCGCAACATGAAAACGGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTTTACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGGTTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTGCGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTTGC]

[+] EMBL BM642898             [CCGCTCAACGAATACATCGTTCAGCTCGCAACATGAAAACGGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTTTACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGGTTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTGCGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTTGC]




>consensus_5817#1
CCGCTCAACGAATACATCGTTCAGCTCGCAACATGAAAACGGTCATAGTACTGTTCGCCC
TAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGG
TTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCAAAATTTTGGAATCTC
TTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTG
TTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTTTACCTCCATTTGCAA
AGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGGTTTTCAACCCACAAG
TGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTGCGATGGGAATGGACGA
TCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5817#0      CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCA 60
consensus_5817#1      ------------CCGCTC--AACGAATACATCGTTCAGCTCGCAACATGAAAA-CGGTCA 45
                                  **** *  ** ****************************** * ****

consensus_5817#0      TAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAG 120
consensus_5817#1      TAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAG 105
                      ************************************************************

consensus_5817#0      AGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCA 180
consensus_5817#1      AGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCA 165
                      ************************************* **********************

consensus_5817#0      AAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACAC 240
consensus_5817#1      AAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACAC 225
                      ************************************************************

consensus_5817#0      GTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTT 300
consensus_5817#1      GTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTT 285
                      ********************************** ******      *** *    ****

consensus_5817#0      TACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGG 360
consensus_5817#1      TACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGG 345
                      ***** *  * * * * *** ** **  *  **********  ********* *******

consensus_5817#0      ATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTA 420
consensus_5817#1      -TTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTG 404
                       ********************* *** **  ********** *** * *** ******* 

consensus_5817#0      TGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCAT 480
consensus_5817#1      CGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTT 464
                       ***** ********* * ******** **** ************* ******* * * *

consensus_5817#0      GCAGCT 486
consensus_5817#1      GC---- 466
                      **