cluster # 5819

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Anopheles gambiae
cluster # 5819 cluster # 5819 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5819#0 length = 669 sequences # 1

consensus_5819#1 length = 527 sequences # 1
consensus_5819#2 length = 341 sequences # 2

consensusID : consensus_5819#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTACGTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAATAGTGTTCTTTGTGCGTGAGTGTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAGCCGGAAGATTTGAAGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCTGTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGTGCTGATCGACACG]

[+] EMBL BM611900             [CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTACGTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAATAGTGTTCTTTGTGCGTGAGTGTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAGCCGGAAGATTTGAAGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCTGTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGTGCTGATCGACACG]




>consensus_5819#0
CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTAC
GTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAATAGTGTTCTTTGTGCGTGAGTGT
GTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCCCC
AAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAG
GAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGA
CAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAGCCG
GAAGATTTGAAGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTC
AACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAAC
CTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCAT
CTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCTGTTG
CGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGTGCTG
ATCGACACG

consensusID : consensus_5819#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTACGCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGTGTGTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAGCCGGAAGATTTGAGGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGG]

[+] EMBL BM640445             [GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTACGCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGTGTGTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAGCCGGAAGATTTGAGGAAAAAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGG]




>consensus_5819#1
GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTACGCGATTGAATTTGTGGAACTA
AAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGTGTGTGTGTGTGGGAGTTAATTCCTG
TTAGTGCCCTCAACAAAAAAAAGAAACAACCCCCAAAATGCCAACCTTGCTGGAGGCGCT
CGAGGAGAAGTACGGCATGGAGCCGGACGAGAAGGAAGAACACGTGGAGGAGGAAGTGCT
GGTGTCGATCTTTGTTCCGAAGCTGCCCCCGAGACAAAGCACACCACAGCTACTTATACT
GAACGATTGCAATATCGATCGGGCCGGCGAGCCGGAAGATTTGAGGAAAAAGTGTCGCAT
CGTGAAGGAACTCGACCTGGCACAGAACAAGCTCAACAACTGGAATGAGGTATTTGTCAT
CCTGTCACACATGCCGCGGGTCGAGTTTGTGAACCTCAGCCTCAACCATCTGACCGGGCC
GATCCAGAAGCCCCCCGTCACGAAGATGGACCATCTGCGCAATCTGG

consensusID : consensus_5819#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 341
fasta sequence

                              [AAAAGAAAAAACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGAGTTTTCCTTCTGGGCCGTTTGGCTATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAGAAAGGCCACATGTGCTCGAGCGGTTTGTTTTT]

[-] EMBL CNS08OD2             [AAAAGAAAAAACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGAGTTTTCCTTCTGGGCCGTTTGGCTATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCC                                                  ]
[+] EMBL CNS08OD1             [                                                         tcaaTCTGGG CGTTTGGC ATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAACGCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAGAAAGGCCACATGTGCTCGAGCGGTTTGTTTTT]




>consensus_5819#2
AAAAGAAAAAACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGAGTTTTCC
TTCTGGGCCGTTTGGCTATCCGGATTTGTGCGTTTGAGAGAAAAGAAAGAAAAAAAAAAC
GCACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACA
AAAAGGACAGCTGAAAAGTACGCGATTCGATTTGTGGAACTAAAACTAGTGAAAAAAAGA
TAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCCCTCAAAAACA
AAAAAAAAGAAAGGCCACATGTGCTCGAGCGGTTTGTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5819#0      CCGAAACAACAATCACACCAACCTTCCTCTTACCAGATAAAAAGGGTAGCTGAAAAGTAC 60
consensus_5819#1      ---------------------GCTCCGGAAAATCAAACAAAAAGGACAGCTGAAAAGTAC 39
consensus_5819#2      --------------------------------------AAAAGAAAAAACTAAAAGCTGC 22
                                                            ****     * ** ***  * *

consensus_5819#0      GTGATTCAATTTGTGGAACTAAAACTAGTGAAAAAAA--TAGTGTTCTTTGTGCGTGAGT 118
consensus_5819#1      GCGATTGAATTTGTGGAACTAAAACTAGTGAAAAAAAGATAGTGTTCTTTGTGTGT--GT 97
consensus_5819#2      G-----GAATTCCTCGAGC----ACTGTTGGCCTACTG-GAGTTTTCCTTCTGGGCC-GT 71
                      *      ****  * ** *    ***  **    *     *** *** ** ** *   **

consensus_5819#0      GTGTGTGTGGAAGTCAATTCCTGTTAGTGCCCTCAAAAACAAAAAAAAAAGAAACAACCC 178
consensus_5819#1      GTGTGTGTGGGAGTTAATTCCTGTTAGTGCCCTCAACA-----AAAAAAAGAAACAACCC 152
consensus_5819#2      TTGGCTATCCGGATTTGTGCGTTTGAGAG-----AAAAG----AAAGAAAAAAAAAACGC 122
                       **  * *     *   * * * * ** *     ** *     *** *** *** *** *

consensus_5819#0      CCAAAATGCCAACCTTGCTGGA-GGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAG 237
consensus_5819#1      CCAAAATGCCAACCTTGCTGGA-GGCGCTCGAGGAGAAGTACGGCATGGAGCCGGACGAG 211
consensus_5819#2      ACGCAAAGAAATGCGTAAAAAATAGCCCTTCCCGTCTCGTGCTCCGGAAAACCAGACAAA 182
                       *  ** *  *  * *     *  ** **    *    ** *  *    * ** *** * 

consensus_5819#0      AAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCG 297
consensus_5819#1      AAGGAAGAACACGTGGAGGAGGAAGTGCTGGTGTCGATCTTTGTTCCGAAGCTGCCCCCG 271
consensus_5819#2      AAGGA----CAGCTGAA-----AAGTACGCGATTCGATTTGTGGAACTAAA--ACTAGTG 231
                      *****    **  ** *     **** *  *  ***** * **   * **    *    *

consensus_5819#0      AGACAAAGCACACCACAGCTACTTATACTAAACGATTGCAATATCGATCGGGCCGGTGAG 357
consensus_5819#1      AGACAAAGCACACCACAGCTACTTATACTGAACGATTGCAATATCGATCGGGCCGGCGAG 331
consensus_5819#2      AAAAAAAG-ATAGTGTTCTTTGTGCGTGTGTGTGTGTGGGAGTCAATTCCTGTTAGTGCC 290
                      * * **** * *       *  *     *    *  **  *      **  *   * *  

consensus_5819#0      CCGGAAGATTTGAAGAAA-AAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAA 416
consensus_5819#1      CCGGAAGATTTGAGGAAA-AAGTGTCGCATCGTGAAGGAACTCGACCTGGCACAGAACAA 390
consensus_5819#2      CTCAAAAACAAAAAAAAAGAAAGGCCACAT-GTGCTCGAG--CGGTTTGTTTTT------ 341
                      *   ** *    *  *** **  * * *** ***   **   **   **           

consensus_5819#0      GCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGT 476
consensus_5819#1      GCTCAACAACTGGAATGAGGTATTTGTCATCCTGTCACACATGCCGCGGGTCGAGTTTGT 450
consensus_5819#2      ------------------------------------------------------------
                                                                                  

consensus_5819#0      GAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGA 536
consensus_5819#1      GAACCTCAGCCTCAACCATCTGACCGGGCCGATCCAGAAGCCCCCCGTCACGAAGATGGA 510
consensus_5819#2      ------------------------------------------------------------
                                                                                  

consensus_5819#0      CCATCTGCGCAATCTGGTGCTGAACAACACCAAGCTGGAATGGTGCAGCGTGGAGAAGCT 596
consensus_5819#1      CCATCTGCGCAATCTGG------------------------------------------- 527
consensus_5819#2      ------------------------------------------------------------
                                                                                  

consensus_5819#0      GTTGCGCTTGCTGCCCGCCCTCGAGGAGCTGCATCTTAGCCTGAACGAGTATACGCATGT 656
consensus_5819#1      ------------------------------------------------------------
consensus_5819#2      ------------------------------------------------------------
                                                                                  

consensus_5819#0      GCTGATCGACACG 669
consensus_5819#1      -------------
consensus_5819#2      -------------