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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 840 fasta sequence
[GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG]
[+] EMBL BX608702 [GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG]
[+] EMBL BX617985 [ ACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCA ]
consensusID : consensus_5827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT]
[+] EMBL BM614094 [CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT]
consensusID : consensus_5827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG]
[+] EMBL BX626296 [GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5827#0 GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAA 60
consensus_5827#2 ----------------------------------GGCTAAAGCCGCAGACGGTTGAAGAA 26
consensus_5827#1 ------------------------------------------------------------
consensus_5827#0 TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 119
consensus_5827#2 TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 85
consensus_5827#1 ------------------------------CCGAATGTTTCGAATAATATCC-CGAGCTC 29
** * * ** * ** ** ** **
consensus_5827#0 TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGAT 179
consensus_5827#2 TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGAT 145
consensus_5827#1 TGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTG--GCTAAATAACCGGCTTTACGAT 87
* * *** *** **** * ** * * *** ************
consensus_5827#0 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAA 239
consensus_5827#2 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 205
consensus_5827#1 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 147
***************************** ********************* ********
consensus_5827#0 CATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCA 299
consensus_5827#2 CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 265
consensus_5827#1 CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 207
*********** ***************** ******************************
consensus_5827#0 TCATCATCATCATCGTC---------GGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCC 350
consensus_5827#2 TCATCATCATCATC---------------------------------------------- 279
consensus_5827#1 TCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCC 267
**************
consensus_5827#0 GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTG 410
consensus_5827#2 ------------------------------------------------------------
consensus_5827#1 GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTG 327
consensus_5827#0 TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 470
consensus_5827#2 ------------------------------------------------------------
consensus_5827#1 TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 387
consensus_5827#0 TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 530
consensus_5827#2 ------------------------------------------ATCCTCCTCATCGGTCAA 297
consensus_5827#1 TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 447
******************
consensus_5827#0 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 590
consensus_5827#2 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 357
consensus_5827#1 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 507
************************************************************
consensus_5827#0 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 650
consensus_5827#2 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 417
consensus_5827#1 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 567
************************************************************
consensus_5827#0 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 710
consensus_5827#2 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 477
consensus_5827#1 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 627
************************************************************
consensus_5827#0 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 770
consensus_5827#2 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 537
consensus_5827#1 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 687
************************************************************
consensus_5827#0 ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 830
consensus_5827#2 ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 597
consensus_5827#1 AT---------------------------------------------------------- 689
**
consensus_5827#0 TGGGAAATAG-------------------------------------------------- 840
consensus_5827#2 TGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATA 657
consensus_5827#1 ------------------------------------------------------------
consensus_5827#0 ------
consensus_5827#2 AATTCG 663
consensus_5827#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||