cluster # 5883

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Anopheles gambiae
cluster # 5883 cluster # 5883 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5883#0 length = 708 sequences # 3

consensus_5883#1 length = 685 sequences # 1

consensusID : consensus_5883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 708
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCG-GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC-GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAGGAGCAGCAG]

[+] EMBL BM647017             [CCGCCCACGCGTCCGCCCACGCGTCCG GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAGGAGCAGCAG]
[+] EMBL BM656899             [                        CCGTGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAG         ]
[+] EMBL BM624935             [                        CCG GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTCGGGAAAAGAGTTTGCACCTAGAACT                        ]




>consensus_5883#0
CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCATAACTAGTTTCGAGTGTACATGTG
AGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAA
GCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAA
CACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGA
TCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGAT
TCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACT
GTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCG
AGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAG
GGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACC
TCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCAC
CATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC
GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAGGAGCAGCAG

consensusID : consensus_5883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGGTCATCTAATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGGTCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA]

[+] EMBL BM644181             [CCGGTCATCTAATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGGTCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA]




>consensus_5883#1
CCGGTCATCTAATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGA
GTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAAGCTAGCCTG
ACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTC
TGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTT
TCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGA
TCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAAC
AGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTA
AGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAA
AGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCG
ACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAA
GGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGGTCGGAAAAG
AGTTTGCACCTAGAAACTGATGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5883#0      CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCATAACTAGTTTCGAGTGTACATGTG 60
consensus_5883#1      --------CCGGTCATCTA-ATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTG 51
                               **  *  * *   ***  *********************************

consensus_5883#0      AGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAA 120
consensus_5883#1      AGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAA 111
                      **************************************************** *******

consensus_5883#0      GCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAA 180
consensus_5883#1      GCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAA 171
                      ************************************************************

consensus_5883#0      CACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGA 240
consensus_5883#1      CACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGA 231
                      ************************************************************

consensus_5883#0      TCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGAT 300
consensus_5883#1      TCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGAT 291
                      ************************************************************

consensus_5883#0      TCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACT 360
consensus_5883#1      TCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACT 351
                      ************************************************************

consensus_5883#0      GTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCG 420
consensus_5883#1      GTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCG 411
                      ************************************************************

consensus_5883#0      AGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAG 480
consensus_5883#1      AGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAG 471
                      ************************************************************

consensus_5883#0      GGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACC 540
consensus_5883#1      GGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACC 531
                      ************************************************************

consensus_5883#0      TCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCAC 600
consensus_5883#1      TCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCAC 591
                      ************************************************************

consensus_5883#0      CATGGAGAAGGACACAGGCAC-AAAATGCACAACGG-CGCTACTAGTCTAGCTGCAAAGG 658
consensus_5883#1      CATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGG 651
                      ********************* ************** ***********************

consensus_5883#0      TCGGAAAAGAGTTTGCACCTAGAA-CTGATGTAATAATAGAGGAGCAGCAG 708
consensus_5883#1      TCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA----------------- 685
                      ************************ *********