cluster # 5889

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5889 cluster # 5889 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5889#0 length = 1532 sequences # 3

consensus_5889#1 length = 716 sequences # 1

consensusID : consensus_5889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1532
fasta sequence

                              [ACAGAGCTACAGTTTAATCTTTTGCCGCAAAAACCGAACGCAAATTAATTATTCCACACATGCAACCGAACGGAGCAAATAGTTAAAGTAATTAATAACGATGGTATTATTGATAACAGAACTGCATAAAGGTGGTAGTGATGAGATTCTTGTAAATTTGAGATAAAAAAAAGAATACAAAGAAAATAAATAAGGAAAAATAGAATTGCACTGATGAGCGAGGAGTAAACATTTGTAAGTTAAGAGAACACTAGCTACACGTAAGGTAGCAGACTAACTATAATCGAGCTCTTGATTTCCACTCATTTAGACTCTTCGTTTCGCTTTGCTAGTTGTGAATAGTTTTCAAACTGTTCGTTTGATTTGATGTTTTGGTTCAGTACGTTTCATTACCACTTTATACGTGCTACACACTGCTCCCCGTAGGAAGAAAATTATTAGCAAAACCGTTTTACTATGCTCCCGAGCTGAGAGGCTCCAGCAAGTGTGTTAGAGACAAATGCAACCCCCATGGGATGGAAAGATTGTGTGCAAGAGTGCATTCATGTAAAAATGTGATACTTTTCGCCCAGCCATTGGCCCGGCCAAGTTGTCTGTTAGAGCAGTACGGCAACAACGCTGCCTGAAGTTTGTATGATACACCAGTGTAACCAAGCAAGAGTGCCGATAGCTACTCGAACGTTAATTATTTAATGCTGTTTCATAGATACATAGTGTGCTACTGCGCCAGATGATGAGTCAACATATAGAACGATCGTGTGTGTTTAGTTGATCATGAGAAGATAACTGTAACTAGCAAACAGATGCATTTAAACGCCCCTCTTCTTCTCTGTTTTCCGGTTCAACAATCAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTAACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAACGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCGTACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTATTTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAACATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACAAGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAATATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAAGAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGANGTCTACGTCTAAGCTCTCTACGCAACTATTGGACAGGNGAAAATAAAA]

[+] EMBL BX609038             [ACAGAGCTACAGTTTAATCTTTTGCCGCAAAAACCGAACGCAAATTAATTATTCCACACATGCAACCGAACGGAGCAAATAGTTAAAGTAATTAATAACGATGGTATTATTGATAACAGAACTGCATAAAGGTGGTAGTGATGAGATTCTTGTAAATTTGAGATAAAAAAAAGAATACAAAGAAAATAAATAAGGAAAAATAGAATTGCACTGATGAGCGAGGAGTAAACATTTGTAAGTTAAGAGAACACTAGCTACACGTAAGGTAGCAGACTAACTATAATCGAGCTCTTGATTTCCACTCATTTAGACTCTTCGTTTCGCTTTGCTAGTTGTGAATAGTTTTCAAACTGTTCGTTTGATTTGATGTTTTGGTTCAGTACGTTTCATTACCACTTTATACGTGCTACACACTGCTCCCCGTAGGAAGAAAATTATTAGCAAAACCGTTTTACTATGCTCCCGAGCTGAGAGGCTCCAGCAAGTGTGTTAGAGACAAATGCAACCCCCATGGGATGGAAAGATTGTGTGCAAGAGTGCATTCATGTAAAAATGTGATACTTTTCGCCCAGCCATTGGCCCGGCCAAGTTGTCTGTTAGAGCAGTACGGCAACAACGCTGCCTGAAGTTTGTATGATACACCAGTGTAACCAAGCAAGAGTGCCGATAGCTACTCGAACGTTAATTATTTAATGCTGTTTCATAGATACATAGTGTGCTACTGCGCCAGATGATGAGTCAACATATAGAACGATCGTGTGTGTTTAGTTGATCATGAGAAGATAACTGTAACTAGCAAACAGATGCATTTAAACGCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX617690             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCAGCAAGTGTGTTAGAGACAAATGCAACCCCCATGGGATGGAAAGATTGTGTGCAAGAGTGCATTCATGTAAAAATGTGATACTTTTCGCCCAGCCATTGGCCCGGCCAAGTTGTCTGTTAGAGCAGTACGGCAACAACGCTGCCTGAAGTTTGTATGATACACCAGTGTAACCAAGCAAGAGTGCCGATAGCTACTCGAACTTTAATTATTTAATGCTGTTTCATAGATACATAGTGTGCTACTGCGCCAGATGATGAGTCAACATATAGAACGATCGTGTGTGTTTAGTTGATCATGAGAAGAGAACTGTAACTAGCAAACAGATGCATTTAAACGCCCCTCTTCTTCTCTGTTTTCCGGTTCAACAATCAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTAACCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX620608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTAAACGCCCCTCTTCTTCTCTGTTTTCCGGTTCAACAATCAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTAACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAACGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCGTACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTATTTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAACATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACAAGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAATATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAAGAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGANGTCTACGTCTAAGCTCTCTACGCAACTATTGGACAGGNGAAAATAAAA]




>consensus_5889#0
ACAGAGCTACAGTTTAATCTTTTGCCGCAAAAACCGAACGCAAATTAATTATTCCACACA
TGCAACCGAACGGAGCAAATAGTTAAAGTAATTAATAACGATGGTATTATTGATAACAGA
ACTGCATAAAGGTGGTAGTGATGAGATTCTTGTAAATTTGAGATAAAAAAAAGAATACAA
AGAAAATAAATAAGGAAAAATAGAATTGCACTGATGAGCGAGGAGTAAACATTTGTAAGT
TAAGAGAACACTAGCTACACGTAAGGTAGCAGACTAACTATAATCGAGCTCTTGATTTCC
ACTCATTTAGACTCTTCGTTTCGCTTTGCTAGTTGTGAATAGTTTTCAAACTGTTCGTTT
GATTTGATGTTTTGGTTCAGTACGTTTCATTACCACTTTATACGTGCTACACACTGCTCC
CCGTAGGAAGAAAATTATTAGCAAAACCGTTTTACTATGCTCCCGAGCTGAGAGGCTCCA
GCAAGTGTGTTAGAGACAAATGCAACCCCCATGGGATGGAAAGATTGTGTGCAAGAGTGC
ATTCATGTAAAAATGTGATACTTTTCGCCCAGCCATTGGCCCGGCCAAGTTGTCTGTTAG
AGCAGTACGGCAACAACGCTGCCTGAAGTTTGTATGATACACCAGTGTAACCAAGCAAGA
GTGCCGATAGCTACTCGAACGTTAATTATTTAATGCTGTTTCATAGATACATAGTGTGCT
ACTGCGCCAGATGATGAGTCAACATATAGAACGATCGTGTGTGTTTAGTTGATCATGAGA
AGATAACTGTAACTAGCAAACAGATGCATTTAAACGCCCCTCTTCTTCTCTGTTTTCCGG
TTCAACAATCAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATAT
GCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTA
CCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTA
ACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAAC
GGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCGT
ACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTATT
TAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAAC
ATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACAA
GAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAAT
ATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAAG
AAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGANGTCTACGTCTAAGCTC
TCTACGCAACTATTGGACAGGNGAAAATAAAA

consensusID : consensus_5889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence

                              [CCGCCCACGCGTCCGAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTAACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAACGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCGTACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTATTTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAACATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACAAGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAATATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAAGAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGAGGTCTACGTCTAAGCTCTCTACGCAACTATTGGACAGGTGAAAAATAAAACCAGAACGGCAATACACA]

[+] EMBL BM627179             [CCGCCCACGCGTCCGAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACTAACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAACGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCGTACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTATTTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAACATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACAAGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAATATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAAGAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGAGGTCTACGTCTAAGCTCTCTACGCAACTATTGGACAGGTGAAAAATAAAACCAGAACGGCAATACACA]




>consensus_5889#1
CCGCCCACGCGTCCGAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCC
CATATGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCG
TGTTACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAAT
TACTAACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGAT
CAAACGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAA
AGCGTACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGC
TTATTTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGA
ACAACATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAAC
AACAAGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCA
TTAATATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAA
ACAAGAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGAGGTCTACGTCTA
AGCTCTCTACGCAACTATTGGACAGGTGAAAAATAAAACCAGAACGGCAATACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5889#0      ACAGAGCTACAGTTTAATCTTTTGCCGCAAAAACCGAACGCAAATTAATTATTCCACACA 60
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      TGCAACCGAACGGAGCAAATAGTTAAAGTAATTAATAACGATGGTATTATTGATAACAGA 120
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      ACTGCATAAAGGTGGTAGTGATGAGATTCTTGTAAATTTGAGATAAAAAAAAGAATACAA 180
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      AGAAAATAAATAAGGAAAAATAGAATTGCACTGATGAGCGAGGAGTAAACATTTGTAAGT 240
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      TAAGAGAACACTAGCTACACGTAAGGTAGCAGACTAACTATAATCGAGCTCTTGATTTCC 300
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      ACTCATTTAGACTCTTCGTTTCGCTTTGCTAGTTGTGAATAGTTTTCAAACTGTTCGTTT 360
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      GATTTGATGTTTTGGTTCAGTACGTTTCATTACCACTTTATACGTGCTACACACTGCTCC 420
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      CCGTAGGAAGAAAATTATTAGCAAAACCGTTTTACTATGCTCCCGAGCTGAGAGGCTCCA 480
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      GCAAGTGTGTTAGAGACAAATGCAACCCCCATGGGATGGAAAGATTGTGTGCAAGAGTGC 540
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      ATTCATGTAAAAATGTGATACTTTTCGCCCAGCCATTGGCCCGGCCAAGTTGTCTGTTAG 600
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      AGCAGTACGGCAACAACGCTGCCTGAAGTTTGTATGATACACCAGTGTAACCAAGCAAGA 660
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      GTGCCGATAGCTACTCGAACGTTAATTATTTAATGCTGTTTCATAGATACATAGTGTGCT 720
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      ACTGCGCCAGATGATGAGTCAACATATAGAACGATCGTGTGTGTTTAGTTGATCATGAGA 780
consensus_5889#1      ------------------------------------------------------------
                                                                                  

consensus_5889#0      AGATAACTGTAACTAGCAAACAGATGCATTTAAACGCCCCTCTTCTTCTCTGTTTTCCGG 840
consensus_5889#1      --------------------------------------------------------CCGC 4
                                                                              *** 

consensus_5889#0      TTCAACAATC-AAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATA 899
consensus_5889#1      CCACGCGTCCGAAACAACGCAACACCAAAAATTTAACCCGTCGAAATGCCCCATCCCATA 64
                           *   * *************************************************

consensus_5889#0      TGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTT 959
consensus_5889#1      TGCGGGTCACAATTTAAAAAGCTTTACCCATGTTTCATTGATTTCCAATGCTGCCGTGTT 124
                      ************************************************************

consensus_5889#0      ACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACT 1019
consensus_5889#1      ACCGTGATTCAGTTTTATGGACAAAACCTTCGGCTCTAACTGAAATTAACGACAATTACT 184
                      ************************************************************

consensus_5889#0      AACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAA 1079
consensus_5889#1      AACCCAAACCAAACCTAGAAGTTGAATATGAATGACGATGGTACTAAAACGGTGATCAAA 244
                      ************************************************************

consensus_5889#0      CGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCG 1139
consensus_5889#1      CGGATTCTTGCGATTTAAAATAACCAAACTCTTGTCATCCAAAGAGGAAGAGGAAAAGCG 304
                      ************************************************************

consensus_5889#0      TACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTAT 1199
consensus_5889#1      TACGAATAACATGAATATACTGTGGAAACTAATTTCATCTATTGCGAGCTGGTTGCTTAT 364
                      ************************************************************

consensus_5889#0      TTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAA 1259
consensus_5889#1      TTAGCCTTCCGACAAGGGGAGTCGATTAGAACATTTTCTTCCCGTAACGGAACAGAACAA 424
                      ************************************************************

consensus_5889#0      CATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACA 1319
consensus_5889#1      CATTGCAAAGCCAACTAACATTCAACACACTAAACAGCAGCAGATGCAGCATCAACAACA 484
                      ************************************************************

consensus_5889#0      AGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAA 1379
consensus_5889#1      AGAAACAAACGACTATATTTATGATAATTATACATTTCACTGTAATATGATTATCATTAA 544
                      ************************************************************

consensus_5889#0      TATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAA 1439
consensus_5889#1      TATTAAACTATTATACAATTTAAAACAAAATCATATATAGGAAGGTTATTAGTTAAACAA 604
                      ************************************************************

consensus_5889#0      GAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGANGTCTACGTCTAAGCT 1499
consensus_5889#1      GAAAGCTTCGGGATGCGCCCGAACACCCTGATCTGCTGTGGAGAGGTCTACGTCTAAGCT 664
                      ******************************************** ***************

consensus_5889#0      CTCTACGCAACTATTGGACAGGNGAAAA-TAAAA------------------ 1532
consensus_5889#1      CTCTACGCAACTATTGGACAGGTGAAAAATAAAACCAGAACGGCAATACACA 716
                      ********************** ***** *****