cluster # 5894

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Anopheles gambiae
cluster # 5894 cluster # 5894 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5894#0 length = 803 sequences # 2

consensus_5894#1 length = 654 sequences # 1
consensus_5894#2 length = 536 sequences # 1

consensusID : consensus_5894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 803
fasta sequence

                              [CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGCGGCTGGTGGTGCCCACGGTCATACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCT-GGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATC-TCGTTAGGCGTGACGCATTTTTTGGAGCATTTTGTTAACTTCTACTCTCCCA]

[+] EMBL BX622130             [CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGCGGCTGGTGGTGCCCACGGTCATACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCT GGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATC TCGTTAGGCGTGACGCATTTTTTG                            ]
[+] EMBL BM635903             [                                                                                                                                  ccgGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCTGGGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATCTTCGTTAGGCGTGACGCATTTTTTGGAGCATTTTGTTAACTTCTACTCTCCCA]




>consensus_5894#0
CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGC
GGCTGGTGGTGCCCACGGTCATACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGT
ACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATAC
CGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGC
AGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCAT
CCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGT
ATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACG
ATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACT
TCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAA
AGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATT
ACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTT
CCAACAATTCCAAACGCTGGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTAC
AACAGTGAACCCAGAAAGCGATGCTTCCATCTCGTTAGGCGTGACGCATTTTTTGGAGCA
TTTTGTTAACTTCTACTCTCCCA

consensusID : consensus_5894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CAGCCAGCCAGCCGTTGTGAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGAGAGGGGAAGGGGGAAGTAGGGACACTGCTCCCTTCAAACCAGAGGCCAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCAGGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCGTCGCGCATCATCGAGGGCGTTAACATGAAGCTGCTGCAGGAGATAACGTACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGG]

[+] EMBL BX606325             [CAGCCAGCCAGCCGTTGTGAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGAGAGGGGAAGGGGGAAGTAGGGACACTGCTCCCTTCAAACCAGAGGCCAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCAGGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCGTCGCGCATCATCGAGGGCGTTAACATGAAGCTGCTGCAGGAGATAACGTACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGG]




>consensus_5894#1
CAGCCAGCCAGCCGTTGTGAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGAG
AGGGGAAGGGGGAAGTAGGGACACTGCTCCCTTCAAACCAGAGGCCAGCGGCATCATGAA
AGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCA
ACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACT
GCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCAGGGCAGGCCATA
CCGCTCACGATCGATCTGCACAACCTGTCGTCGCGCATCATCGAGGGCGTTAACATGAAG
CTGCTGCAGGAGATAACGTACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACC
GGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTGGAGATACCGC
TCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGG
CGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCG
GCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGG

consensusID : consensus_5894#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGCCGTTGTCTAGGGTTTTGTGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGGGAGGGGAAGGGAGACTGCTCCCTTCAAACCAGAGGCAAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCAGGGCAGGCAACGCCGTACGGTCTACTACACCGCCAAACGGGACCACCTGTCGTCGATGAAGGTGCTCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGGAGCACATCTACGAGTTTGCGTGCGAGCTGCCGTCCCATCTGCCCACCTCGTTCGAGGGCACGTACGGGCACTGCCGCTACACGGCCCAGGTCGTGT]

[+] EMBL BM628581             [CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGCCGTTGTCTAGGGTTTTGTGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGGGAGGGGAAGGGAGACTGCTCCCTTCAAACCAGAGGCAAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCAGGGCAGGCAACGCCGTACGGTCTACTACACCGCCAAACGGGACCACCTGTCGTCGATGAAGGTGCTCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGGAGCACATCTACGAGTTTGCGTGCGAGCTGCCGTCCCATCTGCCCACCTCGTTCGAGGGCACGTACGGGCACTGCCGCTACACGGCCCAGGTCGTGT]




>consensus_5894#2
CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGCCGTTGTCTAGG
GTTTTGTGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGGGAGGGGAAGGGA
GACTGCTCCCTTCAAACCAGAGGCAAGCGGCATCATGAAAGTGCACTGTGACATCCGCTT
TACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACGGGCCACGTCCAGAT
CAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAA
TGTACAGTGGTCAGAGAAGCGGGGCCAGGGCAGGCAACGCCGTACGGTCTACTACACCGC
CAAACGGGACCACCTGTCGTCGATGAAGGTGCTCGTTGGTGCGCAACAGAATGGCACGCC
CACAGAACTGCCGGCCGGGGAGCACATCTACGAGTTTGCGTGCGAGCTGCCGTCCCATCT
GCCCACCTCGTTCGAGGGCACGTACGGGCACTGCCGCTACACGGCCCAGGTCGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5894#1      ------------------------------------------------CAGCCAGCCAGC 12
consensus_5894#2      -----------CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGC 49
consensus_5894#0      CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGC 60
                                                                          *   ****

consensus_5894#1      CGTTGT-------------GAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGA 59
consensus_5894#2      CGTTGTCTAGGGTTTTG-TGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGG 108
consensus_5894#0      GGCTGGTGGTGCCCACGGTCATACCGACCTGCG-GCGATCAGAATCTCATCTCGGTGGCG 119
                       * **               * *    * **** *   *     * ** * *  * *   

consensus_5894#1      GAGGGGAAG-----GGGGAAGTAGGGACACTGCTCCC-TTCAAACCAGAGGCCAGCGGCA 113
consensus_5894#2      GAGGGGAAG-----GGAGA----------CTGCTCCC-TTCAAACCAGAGGCAAGCGGCA 152
consensus_5894#0      TACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATA 179
                       *  **  *     *  *             *** *  ***  * * *  ** ** *  *

consensus_5894#1      TCATGAAAGTGCACTGTGACATC--CGCTTTACCAACAGCACGCAGGGAG---CGTACCT 168
consensus_5894#2      TCATGAAAGTGCACTGTGACATC--CGCTTTACCAACAGCACGCAGGGAG---CGTACCT 207
consensus_5894#0      CCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCG 239
                       *    *    *  *  **   *   * * * *** ****  ***  *     ****** 

consensus_5894#1      TAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAA 228
consensus_5894#2      TAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAA 267
consensus_5894#0      CAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCA 299
                       **  * * **    *    *    **    * ** **** *    **   *       *

consensus_5894#1      TGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCA 288
consensus_5894#2      TGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCA 327
consensus_5894#0      TCCGGCAACTC-ACTACCTTCCGCCAGTGGTTTGGTGC-GTGAGCAGACACTTCCA-CCG 356
                      *      ** *  * *     ** *    *    ** * ***  **** *       ** 

consensus_5894#1      GGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCG---TCGCG--CATCATCG 343
consensus_5894#2      GGGCAGGCAACGCCGT--ACGGTCTA-CTACACCGCCAAACGGGACCACC--TGTCGTCG 382
consensus_5894#0      GAGTATTTGCCTCCACCAACGTACGA--GGAAGCGATGAATGCAGCGGCCGTTGTAATAA 414
                      * * *       **    ***  * *     *         *      *     *  *  

consensus_5894#1      A-GGGCGTTA--ACATGAAGCTGCTGCAGGAGATAACG--TACCGACCTGCGG--CGATC 396
consensus_5894#2      ATGAAGGTGC--TCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGG 440
consensus_5894#0      CCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGT 474
                        *    *     *        *             **         ***          

consensus_5894#1      AGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTT 456
consensus_5894#2      AGCACATCTACGAGTTTGCGTGCGAGCTGC------CGTCCCATCTGCCCACCT-CGTTC 493
consensus_5894#0      ACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCA-GCCACCGTTA 533
                      *  *  **  *    *   **       **      **   *   ***    *  ** * 

consensus_5894#1      CGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGC 516
consensus_5894#2      GAGGGCACGTACGGGCACTGCCGCT--------ACACGGCCCAGGTCGTGT--------- 536
consensus_5894#0      CCGCCAAAGCAGTGAC-CTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTAT 592
                        *     *    *    * ** **          *       *      *         

consensus_5894#1      CGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTG 576
consensus_5894#2      ------------------------------------------------------------
consensus_5894#0      ATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATG 652
                                                                                  

consensus_5894#1      GCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTG 636
consensus_5894#2      ------------------------------------------------------------
consensus_5894#0      AAACTTTTCCAACAATTCCAAACGCTGGTCGGAGGATCATCTGCGATCTTTAAAACCTCA 712
                                                                                  

consensus_5894#1      AGCAGACACTTCCACCGG------------------------------------------ 654
consensus_5894#2      ------------------------------------------------------------
consensus_5894#0      TTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATCTCGTTAGGCGTGACGCATTTT 772
                                                                                  

consensus_5894#1      -------------------------------
consensus_5894#2      -------------------------------
consensus_5894#0      TTGGAGCATTTTGTTAACTTCTACTCTCCCA 803