|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence
[GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA-TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA]
[+] EMBL BX468138 [GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA]
[+] EMBL BM643374 [ ataaAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGATCAACTTTGGCACGGGAAGGAGGGGAATGGAGAGCACCGACAAGCA GGCCCTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGCATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAGTC CCAGC ]
consensusID : consensus_5897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA]
[+] EMBL BM633528 [CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA]
consensusID : consensus_5897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG]
[+] EMBL BM630230 [CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5897#0 ------------------------------------------------------------
consensus_5897#1 ------------------------------------------------------------
consensus_5897#2 CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGT 60
consensus_5897#0 ------------------------------------------------------------
consensus_5897#1 ------------------------------------------------------------
consensus_5897#2 TCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCA 120
consensus_5897#0 -----------------------------GCAAGAATCGGCACGTGGAGTACGGGCCGTT 31
consensus_5897#1 ------------------------------------------------------------
consensus_5897#2 CCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTG 180
consensus_5897#0 CAACAGTGCGGATGAAAGTTACTCTGT-----GTGATTAAAACAGCCCATAAAGGATTCT 86
consensus_5897#1 --CCGGTGCGGATGAAAGTTACTCTGT-----GTGAATAAAACAGCCCATAAAGGATTCT 53
consensus_5897#2 AATCTGTG-GAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCT 239
* *** * ** ** *** * * ** * **********************
consensus_5897#0 ACGAAAGGGAAA-TAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 145
consensus_5897#1 ACGAAAGGAAAA-TAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 112
consensus_5897#2 ACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 299
******** *** ********** ************************************
consensus_5897#0 ATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 205
consensus_5897#1 ATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 172
consensus_5897#2 ATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 359
*** * ** *** ***********************************************
consensus_5897#0 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATT 265
consensus_5897#1 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATT 232
consensus_5897#2 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATT 419
*************************************** ** **** ************
consensus_5897#0 GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 325
consensus_5897#1 GCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTA 292
consensus_5897#2 GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 479
*********************** ************************** *********
consensus_5897#0 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 384
consensus_5897#1 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 351
consensus_5897#2 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGG 539
**************************************************** *******
consensus_5897#0 TCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 444
consensus_5897#1 TCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 411
consensus_5897#2 TCGGACAGACGGGTGG-------------------------------------------- 555
****************
consensus_5897#0 ACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCC 504
consensus_5897#1 ACAAGCAGG-CTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCC 470
consensus_5897#2 ------------------------------------------------------------
consensus_5897#0 GGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAT 564
consensus_5897#1 GGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCT 530
consensus_5897#2 ------------------------------------------------------------
consensus_5897#0 CACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGAC-A 623
consensus_5897#1 TCTTCAATGCTTGGACGATTTG-----GATCGAAACCTAAGAAAGCTTAATTCGCGGCTG 585
consensus_5897#2 ------------------------------------------------------------
consensus_5897#0 CCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA 659
consensus_5897#1 TTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA 621
consensus_5897#2 ------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||