cluster # 5909

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Anopheles gambiae
cluster # 5909 cluster # 5909 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5909#0 length = 1036 sequences # 3

consensus_5909#1 length = 258 sequences # 1

consensusID : consensus_5909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1036
fasta sequence

                              [ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGAGTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGGATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGCGTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAACCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCCTATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAA-CACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTTCTACTCGGGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGACCATGAACGCGCAGTCGGAATGCTCCA-GGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGC-TTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAA-CGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGAATCCCACGCGTCCGCCCACGCGTCCGCGG]

[+] EMBL CNS09BVB             [ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGAGTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGGATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGCGTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAACCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCCTATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAAGCACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTTCTACTCGGGGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS08O52             [                                                                                                                                                                                                                                                                                                                                                  ATGTACAAA AACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTCCTTCTCGAGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGACCATGAACGCGCAGTCGGAATGCTCCA GGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGC TTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAA CGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGA                             ]
[-] EMBL BM575675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGCCTCGTTGTCGACCATGAACGCGCAGTCGGAATGCTCCAGGGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCAGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGCTTTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGGGAGGTGAAACCGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTGCTTGCCTGCGCCAGTCTCGGAGAAGAAGGTGTTGAACGAATCCCACGCGTCCGCCCACGCGTCCGCGG]




>consensus_5909#0
ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGA
GTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGG
ATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGC
GTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAA
CCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCC
TATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAACACTATCTTCCAT
CTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGG
GAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATT
CCGACCTCCTCGTAGTTCTACTCGGGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGAC
CATGAACGCGCAGTCGGAATGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGG
CTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGCTTCGACTT
CTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAACGGATCCGGTACCG
CCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTG
CGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCG
TAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGG
TACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGG
GGCACGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGAATCCCACGCGTCC
GCCCACGCGTCCGCGG

consensusID : consensus_5909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CCGGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCC]

[+] EMBL BM647165             [CCGGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCC]




>consensus_5909#1
CCGGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCA
ACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCCAGGACAAG
TTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTAC
ATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAA
ATTTTATAATTAAAAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5909#0      ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGA 60
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      GTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGG 120
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      ATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGC 180
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      GTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAA 240
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCC 300
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      TATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAACACTATCTTCCAT 360
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGG 420
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      GAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATT 480
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CCGACCTCCTCGTAGTTCTACTCGGGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGAC 540
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CATGAACGCGCAGTCGGAATGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGG 600
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGCTTCGACTT 660
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAACGGATCCGGTACCG 720
consensus_5909#1      ------------------------------------------------------------
                                                                                  

consensus_5909#0      CCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTG 780
consensus_5909#1      -----------------------------CCGGGAAGTCACTCACAGAGAGATATGGTTG 31
                                                   * *      *   *** **  *    * ***

consensus_5909#0      --CGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGG 838
consensus_5909#1      GACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGAT---GCACTCTTCTTGGA 88
                        * * *  ***  *****  *  *  * * * ** *  ****   * * * * *  ** 

consensus_5909#0      C-GTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGG 897
consensus_5909#1      CCGTGAAAATCGAAGAC-----TGGGGCCAG-GACAAGTTCACCGAGGACGA--GGTTGA 140
                      * **     * *  * *         *** * **  ** *   *  **  **   * ** 

consensus_5909#0      CGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCA 957
consensus_5909#1      CGATGCAT-TCGAT---CAGATGGTCATTGACGATAAGGGCTACATCGAC-ACTGCTGCT 195
                      ** * * *  ** *   **  *  **   **** *  *  * * ****** *   * ** 

consensus_5909#0      CGGGGCA-CGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGAATCCCACGC 1016
consensus_5909#1      CTGATCGGCATGCT------CACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAA 249
                      * *  *  * * **      * ** * * **  ** * **  *  ***  ***   *   

consensus_5909#0      GTCCGCCCACGCGTCCGCGG 1036
consensus_5909#1      TTAAAAGCC----------- 258
                       *     *