cluster # 5915

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Anopheles gambiae
cluster # 5915 cluster # 5915 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5915#0 length = 720 sequences # 1

consensus_5915#1 length = 619 sequences # 3

consensusID : consensus_5915#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCATGTTCAACATGGTCGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCGAAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTA]

[+] EMBL BM633477             [CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCATGTTCAACATGGTCGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCGAAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTA]




>consensus_5915#0
CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCA
TGTTCAACATGGTCGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCGA
AGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGAACGACAAGAAGC
GCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGT
CCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGA
CGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGT
CCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAAT
CGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCA
AGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGC
GAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGT
CGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAA
TAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTA

consensusID : consensus_5915#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 619
fasta sequence

                              [ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTA-AAGTGAGT--TTTCTCTTTTCCTTCG-GAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTGCCATCGGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACCCCACCACATCACCCTTCCGGCATATGT]

[-] EMBL BX613328             [ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTA AAGTGAGT  TTTCTCTTTTCCTTCG GAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTGCCATCGGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACCCCACCACATCACCCTTCCGGCATATGT]
[+] EMBL AGA282378            [   AGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTAT                                                                                                                                                                                                                                                                    ]
[-] EMBL BX619409             [                                                                                                                                                        ATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAATAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTATAAGTGAGTGCATTCTCTTTTCCTTCGAGAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCGGTCACACC                                                                                  ]




>consensus_5915#1
ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCG
CGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCC
CTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATG
TGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTG
TCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCA
CCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTG
TATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAA
CGTGGTGTGTGCATTTTTAGGCGCTTTTTTAAAGTGAGTTTTCTCTTTTCCTTCGGAACA
TTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTT
GCCATCGGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACCCCACCACA
TCACCCTTCCGGCATATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5915#0      CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCA 60
consensus_5915#1      --------------ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCA 46
                                     * ** *     **   **    *    ***** **  **  * **

consensus_5915#0      TGTTCAACATGGT-CGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCG 119
consensus_5915#1      GTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTA 106
                        *  *******  ** **  ** ** *  **   *       *   * **  * **   

consensus_5915#0      AAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGA-ACGACAAGAA 178
consensus_5915#1      CGTAATAAA-CGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTT 165
                            *** **    *    ** ***** ***     ** * ***    * * *  *  

consensus_5915#0      GCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGT 238
consensus_5915#1      TTGTATGC-GTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGA 224
                        * *  * * **  *   **  * ** * *  **     *****  *  * *     * 

consensus_5915#0      GTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAA 298
consensus_5915#1      ATTTGAATTTCATTTGTCTG--------TTTTACCGGTTGGCGAAACACGTTCAACT--- 273
                       *  *   *  *   **  *        ** * *  * **  ***  ***  ** *    

consensus_5915#0      GACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCT 358
consensus_5915#1      --TGCT-----------CTCTGCCTATTTCACACACTCCACCTAAAC-AGCATATATGTA 319
                         **              * *   ** **   *    *  *    *  **  *   *  

consensus_5915#0      GTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGA 418
consensus_5915#1      ATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAAT----GTTGTATGTGACATTCAGT 375
                       *  ** *  *    **  *****       *   **    *  **  *   *** * * 

consensus_5915#0      ATCGCTC-TGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTG 477
consensus_5915#1      ATAGCTCGTGTATGGTTTTCGATATGC-----TTGGGAATTTCTACACAACGTGGTG-TG 429
                      ** **** ** *  *  * *** ****      **       * * * **   **** **

consensus_5915#0      CCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAA 537
consensus_5915#1      TGCATTTTTAGGCGCTTTTTTAAAGTGAGTTTTC-------TCTTTTCCTTCGG-AACAT 481
                         *    ** *  **  *        *   * *       *  ***  * *** ** * 

consensus_5915#0      AGCGAAACAGTGTGC-ACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTG 596
consensus_5915#1      TCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTG 541
                        **   *  *  ** ** * *   **   **     *   *     *  *  *    **

consensus_5915#0      CAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATAC 656
consensus_5915#1      CCATC---GGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACC--CCAC 596
                      *  **   **        * * *   **  *   **    *   * ****  *     **

consensus_5915#0      GAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGAT 716
consensus_5915#1      CACATCACCCTTCC----GGCATATGT--------------------------------- 619
                       * **   * * *     ***** * *                                 

consensus_5915#0      CGTA 720
consensus_5915#1      ----