cluster # 5919

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Anopheles gambiae
cluster # 5919 cluster # 5919 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5919#0 length = 721 sequences # 1

consensus_5919#1 length = 369 sequences # 1
consensus_5919#2 length = 132 sequences # 2

consensusID : consensus_5919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTTCTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAATGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTTCAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTAATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAGGAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACACTGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACCGTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTTCTCCATCGTCGCACTGCTCGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTATCGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACGCCACANTTACACACAGCCAATAGGGANACANACAATGATAGGGTATCGGTTGTGTTCATGTAGGCAGCAAATTTATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTCACTC]

[+] EMBL AL930576             [GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTTCTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAATGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTTCAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTAATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAGGAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACACTGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACCGTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTTCTCCATCGTCGCACTGCTCGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTATCGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACGCCACANTTACACACAGCCAATAGGGANACANACAATGATAGGGTATCGGTTGTGTTCATGTAGGCAGCAAATTTATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTCACTC]




>consensus_5919#0
GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTT
CTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAA
TGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTT
CAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTA
ATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAG
GAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACAC
TGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACC
GTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTT
CTCCATCGTCGCACTGCTCGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTATC
GATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACGCCACANTTACACACAG
CCAATAGGGANACANACAATGATAGGGTATCGGTTGTGTTCATGTAGGCAGCAAATTTAT
CGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTCACT
C

consensusID : consensus_5919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TTATTCCTTTCCACTGATGGTCCAAACATGTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCGTTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCAAATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAACGCAGAGACGGGTACGGGCGAAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTGGCACCGGCGGCACCGCGGAATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG]

[+] EMBL CNS08UNL             [TTATTCCTTTCCACTGATGGTCCAAACATGTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCGTTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCAAATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAACGCAGAGACGGGTACGGGCGAAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTGGCACCGGCGGCACCGCGGAATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG]




>consensus_5919#1
TTATTCCTTTCCACTGATGGTCCAAACATGTACATAGTTCCACAACGCTTCACTCCGCTA
GAGTAATGAAGGAAACCAGCACAATCGCGTTGAATGAATGTAACCGCCTACTTCAGCTTC
TTCTTCGGGCGCAGGTTGTTGGTGTGGCCACACTTCTTCTTGCGGCAGTTGGTCGCTCTC
GGGTGCAGGCGTGCGTCCATTTGGCGGCAAATCATCTTGTCGCAGTTGTACTTTTGAGCC
AAGAAACGCAGAGACGGGTACGGGCGAAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGT
GGCACCGGCGGCACCGCGGAATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTT
CTTGTCGAG

consensusID : consensus_5919#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 132
fasta sequence

                              [CGACCCACGCGTCCGGGAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAACAAAAAAATATACTGGACCGGCGGGGGAGTGGACGGAC]

[+] EMBL BM634894             [CGACCCACGCGTCCGGGAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAACAAAAAAATATACTGGACCGGCGGGGGAGTGGACGGAC]
[+] EMBL AGA282905            [                GAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACAAAAACAAA                                ]




>consensus_5919#2
CGACCCACGCGTCCGGGAGATACTACACCGCGTGAGAGTAGTGGAATAGAGGAAGGAAGT
GGCGAGGTTTATAAGCGGCTCCAATTAGAACAAACAAAAAAATATACTGGACCGGCGGGG
GAGTGGACGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5919#0      GAATCGCCCCGAGGTTTAAACTCTGACACACTTTCACAGCTAACAATCGTACATCAGCTT 60
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ------------------------------------------------------------
                                                                                  

consensus_5919#0      CTTGTCGTTCAAAGACACAGATGGTGTTTTTCATTTCAAATAGGAAACAAAAGAGAAAAA 120
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ------------------------------------------------------------
                                                                                  

consensus_5919#0      TGCAACTCGCTTTGAGTTTCAAAGCGAAGGTAAAAAAAAATTAGAACAATCGAAGAAGTT 180
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ------------------------------------------------------------
                                                                                  

consensus_5919#0      CAGTTATAAAAACAAACACAAAAGATATAGCGCAAGAGTAGACAAAAGTATAAAGTACTA 240
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ------------------------------------------------------------
                                                                                  

consensus_5919#0      ATTTAGGAAATGATGAGANNGGNACAAAAGAGAAATCGTCCAGAAAAACAACATGACTAG 300
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      -------------------------------TTATTCCTTTCCACTGATGGTCCAAACAT 29
                                                                                  

consensus_5919#0      GAAGTTGAGACAACAGGAACGAAAATCGTAAAAATGATACAGAGCGTATATCGTGTACAC 360
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      GTACATAGTTCCACAACGCTTCACTCCGCTAGAGTAATGAAGGAAACCAGCACAATCGCG 89
                                                                                  

consensus_5919#0      TGAACACACAGACCACAAGCAGAGTTATTCATACATATTCGATTGTATATAGATNTGACC 420
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      TTGAATGAATGTAACCGCCTACTTCAGCTTCTTCTTCGGGCGCAGGTTGTTGGTGTGGCC 149
                                                                                  

consensus_5919#0      GTAGNCCTACGTAAGGTCATANCCCACTGATCCNNANNCTCTCACANTCATCATTGAGTT 480
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ACACTTCTTCTTGCGGCAGTTGGTCGCTCTCGGGTGCAGGCGTGCGTCCATTTGGCGGCA 209
                                                                                  

consensus_5919#0      CTCCATCGTCGCACTGCT-CGCANATAGTTCGAGTCATCTAGTACACTAGATNTNGGTAT 539
consensus_5919#2      -------------CGACC-CACGC---GTCCGGGAGA--TACTACACCGCGTGAGAGTA- 40
consensus_5919#1      AATCATCTTGTCGCAGTTGTACTTTTGAGCCAAGAAA--CGCAGAGACGGGTACGGGCG- 266
                                   *       *        *  *  *              *    *   

consensus_5919#0      CGATTAAAATGGTNTGGATATATAGACTAGCGCCGCGTCTAAACG-CCACANTTACACAC 598
consensus_5919#2      --------GTGGAATAGAGGAAGGAAGTGGCGAGGTTTATAAGCGGCTCCAATTAGAACA 92
consensus_5919#1      ------AAGTCGAGCGGGTACACGAAGCAGAAGCGAGCGTG-GCACCGGCGGCACCGCGG 319
                               * *    *    *   *   *    *    *   *  *  *          

consensus_5919#0      AGCCAATAGGGANACANACAATGATAG-GGTATCGGTTGTGTTCATGTAGGCAGCAAATT 657
consensus_5919#2      AACAAAAAAATATACTGG-ACCGGCGG-GGGAGTGGACGGAC------------------ 132
consensus_5919#1      AATCCGAGGTTACCCAGGAAGTAGCGCCAGAACTGGGTGTTCTTGTCGAG---------- 369
                      *          *  *    *         * *  **  *                     

consensus_5919#0      TATCGTTTTCTAACGTAATCCAANTAGNTAAACCAACTTCTTCACNNTCGCAGGACACTC 717
consensus_5919#2      ------------------------------------------------------------
consensus_5919#1      ------------------------------------------------------------
                                                                                  

consensus_5919#0      ACTC 721
consensus_5919#2      ----
consensus_5919#1      ----