cluster # 5920

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Anopheles gambiae
cluster # 5920 cluster # 5920 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5920#0 length = 675 sequences # 3

consensus_5920#1 length = 139 sequences # 1

consensusID : consensus_5920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence

                              [CCGCGGACGCGTCCGCGGACGCGT--GGGCGCGTGCAGTATCAGTTTCAGTTG----AGCCTTGGCCGTTTTTGTGTAGCAGCACCAGCACTCAACAGCAAGCCTCAAGATGTGTGACGATGATGCGGGAGCACTGGTCGTGGACAATGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGTGATGATGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGTCGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACTGACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGATCTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCTGACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCGAGACGTTCGCCGCACCGGCCGTGTACGTGGCGATCCAGGCCGTGCTGTCGCTGTACGCGTCCGGCCGTACCACCGGCGTGGTGCTCGACTCGGGCGATGGTGTCTCACATACCGTGCCGATCTACGAGGGATACGCGCTGCCCCACGCGATCCTGCGCATGGATCTGGCCGGTCGCGATCTGACCGACTACCTGAT]

[+] EMBL BM647392             [CCGCGGACGCGTGGGCGGACGCGT  GGGCGCGTGCAGTATCAGTTTCAGTTG    AGCCTTGGCCGTTTTTGTGTAGCAGCACCAGCACTCAACAGCAAGCCTCAAGATGTGTGACGATGATGCGGGAGCACTGGTCGTGGACAATGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGCGATGATGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGTCGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACTGACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGATCTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCTGACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCGAGACGTTCGCCGCACCGGCCGTGTACGTGGCGATCCAGGCCGTGCTGTCGCTGTACGCGTCCGGCCGTACCACCGGCGTGGTGCTCGACTCGGGCGATGGTGTCTCACATACCGTGCCGATCTACGAGGGATACGCGCTGCCCCACGCGATCCTGCGCATG                                   ]
[+] EMBL BM619193             [CCGCCCACGCGTCCGCCCACGCGTCCGATCGCGTGCAGTATCAGTTTCAGTTGAGCCAGCCTTGGCCGTTTTTGTGTAGCAGCACCAGCACTCAACAGCAAGCCTCAAGATGTGTGACGATGATGCGGGAGCACTGGTCGTGGACAACGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGTGATGATGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGTCGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACTGACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGATCTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCTGACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCG                                                                                                                                                                                                    ]
[+] EMBL BM641262             [            CCGCGGACGCGT  GGGCGCGAGCAGTATCAGTTTCAGTTG    AGCCTTGGCCGTTTTTGTGTAGCAGCACCAGCATTCAACAGCAAGCCTCAAGATGTGTGACGATGATGCGGGAGCACTGGTCGTGGACAATGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGTGATGATGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGTCGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACTGACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGATCTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCTGACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCGAGACGTTCGCCGCACCGGCCGTGTACGTGGCGATCCAGGCCGTGCTGTCGCTGTACGCGTCCGGCCGTACCACCGGTGTGGTGCTCGACTCGGGCGATGGTGTCTCACATACCGTGCCGATCTACGAGGGTTACGCGCTGCCCCACGCGATCCTGCGCATGGATCTGGCCGGTCGCGATCTGACCGACTACCTGAT]




>consensus_5920#0
CCGCGGACGCGTCCGCGGACGCGTGGGCGCGTGCAGTATCAGTTTCAGTTGAGCCTTGGC
CGTTTTTGTGTAGCAGCACCAGCACTCAACAGCAAGCCTCAAGATGTGTGACGATGATGC
GGGAGCACTGGTCGTGGACAATGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGTGATGA
TGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGT
CGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACT
GACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGAT
CTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCT
GACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCGA
GACGTTCGCCGCACCGGCCGTGTACGTGGCGATCCAGGCCGTGCTGTCGCTGTACGCGTC
CGGCCGTACCACCGGCGTGGTGCTCGACTCGGGCGATGGTGTCTCACATACCGTGCCGAT
CTACGAGGGATACGCGCTGCCCCACGCGATCCTGCGCATGGATCTGGCCGGTCGCGATCT
GACCGACTACCTGAT

consensusID : consensus_5920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [GATCGACAAGCAGGAGTGCGTGCCATTCCGCCGTTTCACTGGCGGTGTGGGCCGTTGCGCTCCGGCCAAGCTCTGGGGCACGTCGGTCGGTCGCTGGCCGAAGACGTCTGCCGGGTTTCTGCTGCCGCTGCTGACCCCC]

[+] EMBL CNS09QWV             [GATCGACAAGCAGGAGTGCGTGCCATTCCGCCGTTTCACTGGCGGTGTGGGCCGTTGCGCTCCGGCCAAGCTCTGGGGCACGTCGGTCGGTCGCTGGCCGAAGACGTCTGCCGGGTTTCTGCTGCCGCTGCTGACCCCC]




>consensus_5920#1
GATCGACAAGCAGGAGTGCGTGCCATTCCGCCGTTTCACTGGCGGTGTGGGCCGTTGCGC
TCCGGCCAAGCTCTGGGGCACGTCGGTCGGTCGCTGGCCGAAGACGTCTGCCGGGTTTCT
GCTGCCGCTGCTGACCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5920#0      CCGCGGACGCGTCCGCGGACGCGTGGGCGCGTGCAGTATCAGTTTCAGTTGAGCCTTGGC 60
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      CGTTTTTGTGTAGCAGCACCAGCACTCAACAGCAAGCCTCAAGATGTGTGACGATGATGC 120
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      GGGAGCACTGGTCGTGGACAATGGATCCGGAATGTGCAAGGCGGGCTTCGCCGGTGATGA 180
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      TGCGCCGCGCGCCGTCTTCCCGTCCATCGTTGGCCGTCCGCGCCACCAGGGTGTGATGGT 240
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      CGGCATGGGCAACAAGGATGCGTACGTGGGCGACGAGGCACAGTCCAAGCGCGGTATACT 300
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      GACGCTCAAGTATCCGATCGAGCACGGCATCATCACGAACTGGGACGACATGGAGAAGAT 360
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      CTGGCACCACACGTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCATCCGGTCCTGCT 420
consensus_5920#1      ------------------------------------------------------------
                                                                                  

consensus_5920#0      GACGGAGGCCCCGCTCAACCCGAAATCGAACCGCGAGAAGATGACACAGATCATGTTCGA 480
consensus_5920#1      ------------------------------------------------GATCGACAAGCA 12
                                                                      ****       *

consensus_5920#0      GACGTTCGCCGCAC-CGGCCGTGTACGTGGCGATCCAGGCCGTGCTGTCGCTGT-ACGCG 538
consensus_5920#1      GGAGTGCGTGCCATTCCGCCGTTTCACTGGCGGTGTGGGCCGTTGCGCTCCGGCCAAGCT 72
                      *  ** **   **  * ***** *   ***** *   ******   *   * *  * ** 

consensus_5920#0      TCCGGCCGTACCACCGGCGTGGTGCTCGACTCGGGCGATGGTGTCTCACATACCG-TGCC 597
consensus_5920#1      CTGGGGCACGTCGGTCGGTCGCTGGCCGAAGACGTCTGCCGGGTTTCTGCTGCCGCTGCT 132
                         ** *    *    *   * **  ***    * *    * ** **   * *** *** 

consensus_5920#0      GATCTACGAGGGATACGCGCTGCCCCACGCGATCCTGCGCATGGATCTGGCCGGTCGCGA 657
consensus_5920#1      GACCCCC----------------------------------------------------- 139
                      ** *  *                                                     

consensus_5920#0      TCTGACCGACTACCTGAT 675
consensus_5920#1      ------------------