cluster # 593

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Anopheles gambiae
cluster # 593 cluster # 593 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_593#0 length = 864 sequences # 1

consensus_593#1 length = 578 sequences # 1

consensusID : consensus_593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 864
fasta sequence

                              [GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATCAGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACTGGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGATGCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTTCCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCAGAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGGTAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACGCCGGTTNTAAGNGTTGTTCCGAAGACCGCCGGAAATTGCCAATATCCCTGGCGAAAAGCCCGGGAAACACGNGGTTAAGGGGNAC]

[+] EMBL BX467759             [GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATCAGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACTGGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGATGCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTTCCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCAGAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGGTAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACGCCGGTTNTAAGNGTTGTTCCGAAGACCGCCGGAAATTGCCAATATCCCTGGCGAAAAGCCCGGGAAACACGNGGTTAAGGGGNAC]




>consensus_593#0
GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATC
AGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACT
GGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGG
CCACGCCCGAAAAGATACTGCAGTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCT
TCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGATG
CCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTTC
CAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACG
TGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCA
AGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACC
GCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGA
CGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCAG
AAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGGT
AGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACGC
CGGTTNTAAGNGTTGTTCCGAAGACCGCCGGAAATTGCCAATATCCCTGGCGAAAAGCCC
GGGAAACACGNGGTTAAGGGGNAC

consensusID : consensus_593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [CGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCAGANNGGCTATGCGCTCGCCTCGAACGCACTGTGGANCAATATGCTCGANCCGGTGGGGGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGTGTNCGAGCGCGGAAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG]

[+] EMBL BX619743             [CGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAGACGGCCAGCGGCGATACGGACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCAGANNGGCTATGCGCTCGCCTCGAACGCACTGTGGANCAATATGCTCGANCCGGTGGGGGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGTGTNCGAGCGCGGAAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG]




>consensus_593#1
CGAGATCTGCTACATGGCCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCG
TCAGTGCGTTGCGAACCTTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGA
GTCCAAAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGC
ACGTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCG
TCAAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTC
ACCGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGG
AGACGGCCAGCGGCGATACGGACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCC
AGANNGGCTATGCGCTCGCCTCGAACGCACTGTGGANCAATATGCTCGANCCGGTGGGGG
GTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGTGTNCGAGCGCGGAAATGC
CATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_593#0      GGCCAGAATCGGCACGAGGCGCGGCAGAAGGTGGCGCTATGTCACAGGACATTCCCTATC 60
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      AGGCCCGCAACCTCGTCAAACGGATGCTGTCCGACCGGAAGGTGGACATCAACAACCACT 120
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      GGAAGATGATCACGCTCATGATCGGTGGCAATGATTTCTGTGCCGAGATCTGCTACATGG 180
consensus_593#1      -------------------------------------------CGAGATCTGCTACATGG 17
                                                                *****************

consensus_593#0      CCACGCCCGAAAAGATACTGCAGT-ATCACGAGAAGAACATCGTCAGTGCGTTGCGAACC 239
consensus_593#1      CCACGCCCGAAAAGATACTGCAGNTATCACGAGAAGAACATCGTCAGTGCGTTGCGAACC 77
                     ***********************  ***********************************

consensus_593#0      TTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAAGTGAGTACGAT 299
consensus_593#1      TTCCGTGATTATCTACCGCGCACGTTCGTCAATCTGGCGGCGAGTCCAA----------- 126
                     *************************************************           

consensus_593#0      GCCGGGATAGCTCTCACGTGATCTCCAATATGATCATCTCCATTTTCTTTCCCTTCGTTT 359
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      CCAGAGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCAC 419
consensus_593#1      ----AGGTGGACATCTTGGCACGCTTCAAGAACAAACCACAGGAGTGCGTCTCGATGCAC 182
                         ********************************************************

consensus_593#0      GTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTC 479
consensus_593#1      GTGATCGAGTGTCCGTGTCTGCTGGCCACACGGTTCCGCAAGCAGCGCGAACGGTTCGTC 242
                     ************************************************************

consensus_593#0      AAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCAC 539
consensus_593#1      AAGCTGATTGAAGACTGGAACATGCTGCAGATGGACATTGCCGCCCGGGAAGAGTTTCAC 302
                     ************************************************************

consensus_593#0      CGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAG 599
consensus_593#1      CGCAAGCCCGACTTTGCCGTCGTTTATCAGCCGTTCACGATGAACCTTACCTTCCCGGAG 362
                     ************************************************************

consensus_593#0      ACGGCCAGCGGCGATACGGGACTTTACGTACATGTCGCTCGATTGCTTCCAGCTTAGCCA 659
consensus_593#1      ACGGCCAGCGGCGATACGG-ACTTTACGTACATGTCGCTCGATTGCTTCCACCTTAGCCA 421
                     ******************* ******************************* ********

consensus_593#0      GAAAGGGCTATGCGCTCGCCTCGAACGCACTTGTGGAAACAATATGCTCCGAAAACCGGG 719
consensus_593#1      GANNGG-CTATGCGCTCGCCTCGAACGCACT-GTGGAN-CAATATGCTC----GANCCGG 474
                     **  ** ************************ *****  **********     * * **

consensus_593#0      TAGGAGGGGTTAAAATCCGCAGTGAAACCTTGGNGGAAGACNGCCGGAANAGTTTTAACG 779
consensus_593#1      TGGG--GGGTAAATCGATGAACTGGGAGCGCGAGTTTACGCTGTTTAGGT-GTNCGAGCG 531
                     * **  **** **     * * **  * *  *     *  * *        **   * **

consensus_593#0      CCGGTTNTAAGNGTTGTTCCGAAGACCGCC-GGAAATTGCCAATATCCCTGGCGAAAAGC 838
consensus_593#1      CGG-----AAATGCCATTCCTGCGAACGCCCGGAAACAGCTAANGCACTCTG-------- 578
                     * *     **  *   ****   ** **** *****  ** **    *   *        

consensus_593#0      CCGGGAAACACGNGGTTAAGGGGNAC 864
consensus_593#1      --------------------------